Variant report

Variant	rs817557
Chromosome Location	chr17:67421476-67421477
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2592208	0.84[ASN][1000 genomes]
rs333910	0.82[ASN][1000 genomes]
rs4968791	0.83[ASN][1000 genomes]
rs707246	0.83[ASN][1000 genomes]
rs707247	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs817543	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs817545	0.90[ASN][1000 genomes]
rs817546	0.89[ASN][1000 genomes]
rs817554	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs817556	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs817565	0.90[ASN][1000 genomes]
rs817566	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520649	chr17:67420433-67440811	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67411400-67425000	Weak transcription	Pancreas	Pancrea
2	chr17:67411400-67425200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr17:67414000-67424200	Weak transcription	Fetal Muscle Leg	muscle
4	chr17:67414000-67429600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr17:67414000-67429800	Weak transcription	Brain Hippocampus Middle	brain
6	chr17:67414400-67421800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr17:67414400-67424000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr17:67414400-67427800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr17:67414400-67429400	Weak transcription	Fetal Stomach	stomach
10	chr17:67414400-67430400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr17:67414400-67430600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr17:67414600-67421600	Weak transcription	A549	lung
13	chr17:67414600-67422400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr17:67414800-67422200	Weak transcription	Duodenum Mucosa	Duodenum
15	chr17:67415400-67422000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr17:67417200-67424000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr17:67417600-67430000	Weak transcription	Brain Substantia Nigra	brain
18	chr17:67418800-67421800	Weak transcription	Spleen	Spleen
19	chr17:67419200-67426600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr17:67419400-67422200	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr17:67419400-67423000	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr17:67419600-67423200	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr17:67419800-67422800	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr17:67419800-67430000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr17:67419800-67436600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr17:67420000-67422200	Enhancers	H1 Cell Line	embryonic stem cell
27	chr17:67420000-67423600	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr17:67420000-67423600	Weak transcription	GM12878-XiMat	blood
29	chr17:67420000-67423600	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr17:67420000-67424200	Weak transcription	Primary T cells from cord blood	blood
31	chr17:67420000-67447600	Weak transcription	Fetal Thymus	thymus
32	chr17:67420000-67498200	Weak transcription	Thymus	Thymus
33	chr17:67420200-67422800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr17:67420200-67424200	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr17:67420200-67426800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr17:67420400-67423800	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr17:67420400-67423800	Weak transcription	Small Intestine	intestine
38	chr17:67420400-67424000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr17:67420400-67424400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr17:67420400-67424600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr17:67420400-67429600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr17:67420600-67421600	Weak transcription	Psoas Muscle	Psoas
43	chr17:67420600-67421800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr17:67420600-67421800	Enhancers	Placenta	Placenta
45	chr17:67420600-67426600	Weak transcription	Primary hematopoietic stem cells	blood
46	chr17:67420600-67427000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr17:67420800-67421800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr17:67420800-67421800	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr17:67420800-67421800	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr17:67420800-67422800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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