Variant report

Variant	rs817546
Chromosome Location	chr17:67413403-67413404
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:67323434..67325106-chr17:67412103..67414795,2	MCF-7	breast:
2	chr17:67411772..67413829-chr17:67415713..67418536,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1963458	0.89[CEU][hapmap]
rs2034100	0.89[CEU][hapmap]
rs2592207	0.89[CEU][hapmap]
rs2592208	0.81[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2592209	0.82[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs333910	0.83[ASN][1000 genomes]
rs333916	0.81[CHB][hapmap]
rs333917	0.81[CHB][hapmap]
rs4968791	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6501323	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs707246	0.85[ASN][1000 genomes]
rs707247	0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs707248	0.89[CEU][hapmap]
rs732322	0.86[CEU][hapmap]
rs817541	0.89[CEU][hapmap]
rs817543	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs817544	0.89[CEU][hapmap]
rs817545	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs817547	0.89[CEU][hapmap]
rs817549	0.89[CEU][hapmap]
rs817550	0.89[CEU][hapmap]
rs817554	0.87[ASN][1000 genomes]
rs817556	0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs817557	0.89[ASN][1000 genomes]
rs817559	0.86[CEU][hapmap]
rs817565	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs817566	0.95[JPT][hapmap];0.83[ASN][1000 genomes]

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67410400-67414000	Active TSS	Rectal Smooth Muscle	rectum
2	chr17:67410400-67414200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr17:67410400-67414200	Active TSS	Skeletal Muscle Male	skeletal muscle
4	chr17:67410400-67415400	Active TSS	GM12878-XiMat	blood
5	chr17:67411200-67418600	Weak transcription	Spleen	Spleen
6	chr17:67411400-67413800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr17:67411400-67413800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr17:67411400-67414200	Active TSS	Skeletal Muscle Female	skeletal muscle
9	chr17:67411400-67425000	Weak transcription	Pancreas	Pancrea
10	chr17:67411400-67425200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr17:67411600-67413800	Weak transcription	Ovary	ovary
12	chr17:67411800-67413600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr17:67411800-67413600	Flanking Active TSS	Duodenum Mucosa	Duodenum
14	chr17:67411800-67413800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr17:67411800-67413800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr17:67412000-67413600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr17:67412000-67413800	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr17:67412000-67414000	Enhancers	Small Intestine	intestine
19	chr17:67412000-67414000	Weak transcription	NH-A	brain
20	chr17:67412000-67414400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
21	chr17:67412000-67414400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr17:67412000-67414600	Weak transcription	Placenta	Placenta
23	chr17:67412200-67413600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr17:67412200-67414400	Enhancers	HepG2	liver
25	chr17:67412200-67414800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr17:67412400-67413800	Weak transcription	Fetal Kidney	kidney
27	chr17:67412400-67413800	Active TSS	Fetal Muscle Leg	muscle
28	chr17:67412400-67413800	Weak transcription	HMEC	breast
29	chr17:67412400-67414400	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr17:67412400-67414400	Enhancers	Fetal Intestine Large	intestine
31	chr17:67412400-67414600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
32	chr17:67412400-67415000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr17:67412400-67415200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr17:67412400-67415400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr17:67412600-67413800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr17:67412600-67413800	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr17:67412600-67413800	Enhancers	Primary hematopoietic stem cells	blood
38	chr17:67412600-67414000	Enhancers	Brain Germinal Matrix	brain
39	chr17:67412600-67414000	Enhancers	Brain Hippocampus Middle	brain
40	chr17:67412600-67414000	Enhancers	Brain Substantia Nigra	brain
41	chr17:67412600-67414000	Enhancers	Thymus	Thymus
42	chr17:67412600-67414400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr17:67412600-67414400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr17:67412600-67414400	Active TSS	Duodenum Smooth Muscle	Duodenum
45	chr17:67412600-67414400	Enhancers	Fetal Intestine Small	intestine
46	chr17:67412600-67414400	Enhancers	Fetal Lung	lung
47	chr17:67412600-67414400	Enhancers	Fetal Stomach	stomach
48	chr17:67412600-67414800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr17:67412600-67419000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr17:67412600-67419200	Weak transcription	Fetal Muscle Trunk	muscle

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