Variant report

Variant	rs2592209
Chromosome Location	chr17:67408931-67408932
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs2592208	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs333910	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs333913	0.82[CHB][hapmap]
rs333916	0.86[CHB][hapmap]
rs333917	0.86[CHB][hapmap]
rs4968791	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs536108	0.83[ASN][1000 genomes]
rs58235597	0.83[ASN][1000 genomes]
rs6501323	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs707246	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs707247	0.91[JPT][hapmap]
rs817543	0.82[CEU][hapmap];0.96[CHB][hapmap];0.87[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs817545	0.85[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs817546	0.82[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs817556	0.91[JPT][hapmap]
rs817565	0.90[JPT][hapmap]
rs817566	0.91[JPT][hapmap]
rs817574	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67408000-67409400	Enhancers	H1 Cell Line	embryonic stem cell
2	chr17:67408000-67409400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr17:67408000-67409800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr17:67408000-67409800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr17:67408200-67409000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr17:67408200-67409600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr17:67408200-67410400	Weak transcription	Thymus	Thymus
8	chr17:67408400-67409000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr17:67408400-67410200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr17:67408400-67410200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr17:67408400-67410400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr17:67408400-67410400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr17:67408400-67410400	Weak transcription	Primary T cells from cord blood	blood
14	chr17:67408600-67409000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr17:67408600-67410400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr17:67408800-67409200	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr17:67408800-67410400	Weak transcription	Fetal Thymus	thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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