Variant report

Variant	rs2592207
Chromosome Location	chr17:67412197-67412198
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:67323434..67325106-chr17:67412103..67414795,2	MCF-7	breast:
2	chr17:67411772..67413829-chr17:67415713..67418536,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11656130	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1622309	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1963458	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2034100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2440132	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2592204	0.84[EUR][1000 genomes]
rs498637	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs707248	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs732322	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs817541	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs817542	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs817543	0.90[CEU][hapmap]
rs817544	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs817545	0.89[CEU][hapmap]
rs817546	0.89[CEU][hapmap]
rs817547	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs817548	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs817549	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs817550	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs817555	1.00[JPT][hapmap];0.91[YRI][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs817558	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs817559	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs817564	1.00[JPT][hapmap]

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67409800-67413200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr17:67410200-67412400	Active TSS	Colonic Mucosa	Colon
3	chr17:67410400-67412200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr17:67410400-67412200	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr17:67410400-67412200	Active TSS	iPS-18 Cell Line	embryonic stem cell
6	chr17:67410400-67412200	Active TSS	Primary T helper naive cells from peripheral blood	blood
7	chr17:67410400-67412200	Active TSS	Brain Anterior Caudate	brain
8	chr17:67410400-67412200	Active TSS	Brain Germinal Matrix	brain
9	chr17:67410400-67412200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr17:67410400-67412200	Active TSS	Fetal Lung	lung
11	chr17:67410400-67412400	Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr17:67410400-67412400	Active TSS	Breast Myoepithelial Primary Cells	Breast
13	chr17:67410400-67412400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr17:67410400-67412400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr17:67410400-67412400	Active TSS	Fetal Intestine Small	intestine
16	chr17:67410400-67412400	Active TSS	Fetal Kidney	kidney
17	chr17:67410400-67412400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr17:67410400-67412600	Active TSS	H9 Cell Line	embryonic stem cell
19	chr17:67410400-67412600	Flanking Active TSS	Primary hematopoietic stem cells	blood
20	chr17:67410400-67412600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr17:67410400-67412600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr17:67410400-67412600	Flanking Active TSS	Adipose Nuclei	Adipose
23	chr17:67410400-67412600	Active TSS	Fetal Muscle Trunk	muscle
24	chr17:67410400-67412600	Active TSS	Right Atrium	heart
25	chr17:67410400-67413000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
26	chr17:67410400-67413000	Active TSS	Psoas Muscle	Psoas
27	chr17:67410400-67413000	Flanking Active TSS	HUVEC	blood vessel
28	chr17:67410400-67413200	Active TSS	H1 Cell Line	embryonic stem cell
29	chr17:67410400-67413200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr17:67410400-67414000	Active TSS	Rectal Smooth Muscle	rectum
31	chr17:67410400-67414200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr17:67410400-67414200	Active TSS	Skeletal Muscle Male	skeletal muscle
33	chr17:67410400-67415400	Active TSS	GM12878-XiMat	blood
34	chr17:67410600-67412200	Active TSS	Sigmoid Colon	Sigmoid Colon
35	chr17:67410600-67412200	Active TSS	Thymus	Thymus
36	chr17:67410600-67412200	Active TSS	Hela-S3	cervix
37	chr17:67410800-67412600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr17:67410800-67412800	Active TSS	Fetal Thymus	thymus
39	chr17:67411000-67412400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
40	chr17:67411000-67412600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
41	chr17:67411000-67412600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
42	chr17:67411000-67413000	Active TSS	Primary T cells fromperipheralblood	blood
43	chr17:67411200-67412200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
44	chr17:67411200-67412200	Active TSS	Stomach Smooth Muscle	stomach
45	chr17:67411200-67412600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
46	chr17:67411200-67412600	Flanking Active TSS	Dnd41	blood
47	chr17:67411200-67418600	Weak transcription	Spleen	Spleen
48	chr17:67411400-67412400	Active TSS	HUES6 Cell Line	embryonic stem cell
49	chr17:67411400-67412600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
50	chr17:67411400-67413800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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