Variant report

Variant	rs11656413
Chromosome Location	chr17:57082013-57082014
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:63)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:63 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr17:57079161..57102634-chr17:57913876..57926818,65	MCF-7	breast:
2	chr17:57002769..57003678-chr17:57081946..57082892,3	MCF-7	breast:
3	chr17:57081989..57082706-chr17:59651880..59652574,2	MCF-7	breast:
4	chr17:56788365..56790066-chr17:57080959..57083142,2	MCF-7	breast:
5	chr17:56787989..56789019-chr17:57081951..57083697,7	K562	blood:
6	chr17:56765191..56767070-chr17:57080846..57083165,2	K562	blood:
7	chr17:56672263..56673095-chr17:57081982..57082932,4	MCF-7	breast:
8	chr17:56947833..56948852-chr17:57081914..57082868,7	MCF-7	breast:
9	chr17:57080749..57084790-chr17:59475777..59478657,4	MCF-7	breast:
10	chr17:57081399..57082175-chr2:159764905..159765650,2	MCF-7	breast:
11	chr1:112501584..112503131-chr17:57081886..57083331,11	MCF-7	breast:
12	chr17:57081118..57083369-chr20:52692245..52694121,2	MCF-7	breast:
13	chr17:56655116..56655638-chr17:57082011..57082570,2	K562	blood:
14	chr17:56704995..56711157-chr17:57077602..57085555,21	MCF-7	breast:
15	chr17:56665113..56665728-chr17:57081917..57082437,2	K562	blood:
16	chr17:56733172..56738327-chr17:57073489..57092327,39	MCF-7	breast:
17	chr17:56947296..56949660-chr17:57081198..57083614,3	MCF-7	breast:
18	chr17:56704993..56710618-chr17:57080733..57088790,13	K562	blood:
19	chr1:112531314..112536748-chr17:57080034..57084131,5	MCF-7	breast:
20	chr1:112532140..112533314-chr17:57081588..57082811,5	MCF-7	breast:
21	chr17:56787440..56789259-chr17:57081756..57083354,39	MCF-7	breast:
22	chr17:57078604..57086934-chr17:57934196..57940443,11	MCF-7	breast:
23	chr17:56670138..56672475-chr17:57081647..57084513,2	MCF-7	breast:
24	chr17:56776782..56780430-chr17:57080025..57082204,3	K562	blood:
25	chr17:57036779..57038011-chr17:57081498..57083855,21	MCF-7	breast:
26	chr1:112532435..112533803-chr17:57081957..57082948,3	MCF-7	breast:
27	chr17:57079857..57082567-chr17:57946939..57949376,2	MCF-7	breast:
28	chr17:56787495..56788962-chr17:57081760..57083373,17	MCF-7	breast:
29	chr17:56783549..56786976-chr17:57080501..57082529,4	MCF-7	breast:
30	chr17:57008746..57010510-chr17:57081891..57083683,2	MCF-7	breast:
31	chr17:56800483..56802476-chr17:57081588..57083637,2	MCF-7	breast:
32	chr17:56595856..56598064-chr17:57078199..57082564,4	MCF-7	breast:
33	chr17:57081920..57082842-chr17:59488631..59489336,2	MCF-7	breast:
34	chr17:56664758..56665738-chr17:57081878..57082919,14	MCF-7	breast:
35	chr17:56796293..56798429-chr17:57080251..57082402,2	MCF-7	breast:
36	chr17:56947797..56949340-chr17:57081937..57083634,13	MCF-7	breast:
37	chr17:56779728..56792339-chr17:57073509..57087081,35	MCF-7	breast:
38	chr17:57073196..57075304-chr17:57080223..57083164,2	K562	blood:
39	chr17:57081492..57083396-chr17:59486312..59487841,15	MCF-7	breast:
40	chr17:56704266..56712683-chr17:57071226..57087843,60	MCF-7	breast:
41	chr17:57081984..57082856-chr20:52719792..52720584,2	MCF-7	breast:
42	chr1:112533490..112534736-chr17:57081986..57083386,10	MCF-7	breast:
43	chr17:56754708..56758759-chr17:57077484..57082546,7	K562	blood:
44	chr17:56689884..56692734-chr17:57082003..57084911,2	MCF-7	breast:
45	chr17:57081989..57082763-chr17:57936457..57937045,2	MCF-7	breast:
46	chr17:56671857..56673433-chr17:57081947..57082872,6	MCF-7	breast:
47	chr17:57064498..57094966-chr17:57913696..57937361,118	MCF-7	breast:
48	chr17:56734908..56739679-chr17:57078265..57087567,18	MCF-7	breast:
49	chr17:56706750..56710517-chr17:57080640..57083943,5	K562	blood:
50	chr17:56754189..56759271-chr17:57080977..57084903,8	K562	blood:

No data

Variant related genes	Relation type
ENSG00000201524	Chromatin interaction
ENSG00000206917	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000108384	Chromatin interaction
ENSG00000231437	Chromatin interaction
ENSG00000267280	Chromatin interaction
ENSG00000202077	Chromatin interaction
ENSG00000264672	Chromatin interaction
ENSG00000121068	Chromatin interaction
ENSG00000200997	Chromatin interaction
ENSG00000266826	Chromatin interaction
ENSG00000062716	Chromatin interaction
ENSG00000171385	Chromatin interaction
ENSG00000187013	Chromatin interaction
ENSG00000199004	Chromatin interaction
ENSG00000267131	Chromatin interaction

Extended variants
information (count: 99 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10853008	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs11079365	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11079368	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11654986	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.95[MKK][hapmap];0.93[TSI][hapmap]
rs11868348	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11870601	0.83[EUR][1000 genomes]
rs12051897	0.82[GIH][hapmap]
rs12232477	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12452313	0.88[CEU][hapmap];0.82[CHB][hapmap]
rs12602346	0.82[EUR][1000 genomes]
rs12603238	1.00[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12936058	0.96[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12938821	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12940681	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12944948	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12947785	0.96[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12948039	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12948746	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12952832	0.83[EUR][1000 genomes]
rs1472288	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap]
rs1588322	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1967415	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2055779	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2158966	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2333410	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34523895	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3826353	0.92[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4076229	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4132925	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4372750	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4398153	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4408596	0.86[AMR][1000 genomes]
rs4500802	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4597376	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4598970	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4636974	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4793593	0.81[EUR][1000 genomes]
rs4932693	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56297715	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57869245	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58092632	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6416932	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6416933	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6503882	0.95[CHB][hapmap];0.82[CHD][hapmap];0.86[JPT][hapmap]
rs6503883	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6503887	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6503889	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6503890	0.96[CEU][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6503893	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6503894	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7207693	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7208505	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap]
rs7209253	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes]
rs7214098	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap]
rs7214335	0.91[CEU][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7214892	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7215808	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7216680	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7216698	0.83[ASN][1000 genomes]
rs7218105	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7218362	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs7223955	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72628394	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7502947	0.82[MEX][hapmap]
rs7503190	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8067264	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8069033	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8071280	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8072712	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8073048	0.83[AMR][1000 genomes]
rs8076121	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8079774	0.83[EUR][1000 genomes]
rs8081297	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8081967	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8082544	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8182277	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9807057	0.82[EUR][1000 genomes]
rs9892062	0.91[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9892795	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9893351	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9894274	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9896313	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9897326	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes]
rs9898916	0.91[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9901181	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9902994	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9907499	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9911578	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv908643	chr17:56803028-57249010	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
2	nsv908644	chr17:56803028-57371432	Strong transcription Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	238 gene(s)	inside rSNPs	diseases
3	esv3335958	chr17:56849544-57385398	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	233 gene(s)	inside rSNPs	diseases
4	nsv908645	chr17:56857281-57208752	Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	150 gene(s)	inside rSNPs	diseases
5	nsv1065063	chr17:56954121-57346694	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
6	nsv510719	chr17:57039353-57104429	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
7	nsv1064384	chr17:57049519-57346694	Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	219 gene(s)	inside rSNPs	diseases
8	nsv908646	chr17:57061238-57255810	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	206 gene(s)	inside rSNPs	diseases
9	nsv833499	chr17:57070693-57288410	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	208 gene(s)	inside rSNPs	diseases
10	esv1801499	chr17:57077996-57107971	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
11	nsv1066388	chr17:57082013-57339981	Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	209 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs11656413	TRIM37	cis	multi-tissue	Pritchard
rs11656413	RAD51C	cis	lymphoblastoid	seeQTL
rs11656413	TRIM37	cis	Adipose Subcutaneous	GTEx
rs11656413	RAD51C	cis	multi-tissue	Pritchard
rs11656413	TRIM37	cis	Muscle Skeletal	GTEx
rs11656413	TRIM37	cis	Whole Blood	GTEx
rs11656413	TRIM37	cis	lymphoblastoid	seeQTL

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:57043400-57087400	Weak transcription	Brain Hippocampus Middle	brain
2	chr17:57054200-57087200	Weak transcription	Fetal Brain Female	brain
3	chr17:57055800-57116200	Weak transcription	Gastric	stomach
4	chr17:57055800-57153600	Weak transcription	Aorta	Aorta
5	chr17:57056400-57120800	Weak transcription	Right Ventricle	heart
6	chr17:57058000-57116600	Weak transcription	Brain Germinal Matrix	brain
7	chr17:57058800-57116400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr17:57060600-57116400	Weak transcription	Esophagus	oesophagus
9	chr17:57062600-57088200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr17:57063000-57085200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr17:57063000-57116200	Weak transcription	Spleen	Spleen
12	chr17:57063200-57116400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr17:57064800-57096200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr17:57064800-57116200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr17:57066000-57151400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr17:57066200-57110600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr17:57067800-57084800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr17:57070400-57113200	Weak transcription	NHEK	skin
19	chr17:57071000-57110800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr17:57071200-57087400	Weak transcription	Hela-S3	cervix
21	chr17:57072800-57084800	Weak transcription	Fetal Heart	heart
22	chr17:57073200-57143800	Weak transcription	Fetal Brain Male	brain
23	chr17:57073800-57094800	Weak transcription	Psoas Muscle	Psoas
24	chr17:57074200-57087800	Weak transcription	Fetal Intestine Small	intestine
25	chr17:57074600-57085400	Weak transcription	Brain Substantia Nigra	brain
26	chr17:57074600-57120600	Weak transcription	Colon Smooth Muscle	Colon
27	chr17:57076400-57084800	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr17:57076600-57085200	Weak transcription	Stomach Smooth Muscle	stomach
29	chr17:57076600-57086200	Weak transcription	Thymus	Thymus
30	chr17:57076600-57103600	Weak transcription	Rectal Smooth Muscle	rectum
31	chr17:57076800-57084800	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr17:57076800-57084800	Weak transcription	K562	blood
33	chr17:57076800-57086000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr17:57076800-57086200	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr17:57076800-57087000	Weak transcription	Left Ventricle	heart
36	chr17:57076800-57088000	Weak transcription	Lung	lung
37	chr17:57076800-57104600	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr17:57077200-57085200	Weak transcription	Fetal Muscle Leg	muscle
39	chr17:57077200-57088600	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr17:57077400-57087200	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr17:57077400-57105200	Weak transcription	HMEC	breast
42	chr17:57077600-57102000	Weak transcription	HSMM	muscle
43	chr17:57078000-57104000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr17:57078200-57084400	Enhancers	Liver	Liver
45	chr17:57078600-57082400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr17:57078600-57087200	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr17:57078800-57082400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr17:57079000-57092600	Weak transcription	Fetal Muscle Trunk	muscle
49	chr17:57079200-57084800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr17:57079200-57084800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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