Variant report

Variant	rs7503190
Chromosome Location	chr17:57184162-57184163
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:530)
CpG islands
(count:61)
Chromatin interactive
region (count:62)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

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No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr17:57183855-57184598	A549	lung:	n/a	n/a
2	POLR2A	chr17:57183539-57184669	A549	lung:	n/a	n/a
3	GATA3	chr17:57183209-57184424	T-47D	breast:	n/a	n/a
4	MAX	chr17:57183963-57184863	K562	blood:	n/a	n/a
5	SIN3AK20	chr17:57183891-57184647	PFSK-1	brain:	n/a	n/a
6	ZBTB33	chr17:57184005-57184664	HepG2	liver:	n/a	n/a
7	TEAD4	chr17:57183984-57184813	K562	blood:	n/a	n/a
8	RFX5	chr17:57183352-57184974	Hela-S3	cervix:	n/a	n/a
9	MYC	chr17:57183445-57184938	Hela-S3	cervix:	n/a	chr17:57183928-57183937 chr17:57183761-57183771
10	BCL3	chr17:57183890-57184818	GM12878	blood:	n/a	n/a
11	GATA3	chr17:57183276-57185078	A549	lung:	n/a	n/a
12	STAT3	chr17:57183990-57184367	MCF10A-Er-Src	breast:	n/a	n/a
13	MXI1	chr17:57183995-57184626	K562	blood:	n/a	n/a
14	POLR2A	chr17:57183719-57185084	GM12892	blood:	n/a	n/a
15	BRCA1	chr17:57183836-57184552	HepG2	liver:	n/a	n/a
16	UBTF	chr17:57183741-57184883	K562	blood:	n/a	n/a
17	RCOR1	chr17:57183344-57184854	K562	blood:	n/a	n/a
18	TBP	chr17:57184114-57185059	Hela-S3	cervix:	n/a	n/a
19	USF1	chr17:57183904-57184640	K562	blood:	n/a	n/a
20	POLR2A	chr17:57183739-57185136	HUVEC	blood vessel:	n/a	n/a
21	ARID3A	chr17:57184018-57184595	K562	blood:	n/a	chr17:57184302-57184317
22	POLR2A	chr17:57183819-57185024	GM12891	blood:	n/a	n/a
23	MYC	chr17:57183653-57184974	NB4	blood:	n/a	chr17:57183928-57183937 chr17:57183761-57183771
24	MYC	chr17:57184063-57184683	K562	blood:	n/a	n/a
25	NR2F2	chr17:57183430-57184879	K562	blood:	n/a	n/a
26	IRF1	chr17:57183919-57184691	K562	blood:	n/a	n/a
27	TCF7L2	chr17:57183230-57185004	MCF-7	breast:	n/a	n/a
28	SIN3AK20	chr17:57183751-57184872	H1-hESC	embryonic stem cell:	n/a	n/a
29	TAF7	chr17:57183768-57184277	H1-hESC	embryonic stem cell:	n/a	n/a
30	TAF1	chr17:57183484-57184865	ECC-1	luminal epithelium:	n/a	n/a
31	POLR2A	chr17:57183864-57184648	MCF10A-Er-Src	breast:	n/a	n/a
32	MAX	chr17:57183426-57184903	Hela-S3	cervix:	n/a	chr17:57183928-57183937 chr17:57183761-57183771
33	EGR1	chr17:57183816-57184626	K562	blood:	n/a	chr17:57184261-57184275
34	MAX	chr17:57183292-57185014	HepG2	liver:	n/a	chr17:57183928-57183937 chr17:57183761-57183771
35	NFE2	chr17:57183963-57184411	GM12878	blood:	n/a	n/a
36	REST	chr17:57183895-57184252	K562	blood:	n/a	n/a
37	USF1	chr17:57183843-57184334	H1-hESC	embryonic stem cell:	n/a	n/a
38	CEBPD	chr17:57183929-57184240	HepG2	liver:	n/a	n/a
39	CHD2	chr17:57183443-57184856	Hela-S3	cervix:	n/a	n/a
40	POLR2A	chr17:57183984-57185038	HepG2	liver:	n/a	n/a
41	SIN3AK20	chr17:57183301-57184985	SK-N-SH	brain:	n/a	n/a
42	CTCF	chr17:57184060-57184210	GM12874	blood:	n/a	n/a
43	TAF1	chr17:57183942-57184327	SK-N-SH	brain:	n/a	n/a
44	YY1	chr17:57183394-57184719	SK-N-SH_RA	brain:	n/a	chr17:57183763-57183772 chr17:57183684-57183695
45	POLR2A	chr17:57183628-57185484	PFSK-1	brain:	n/a	n/a
46	POU2F2	chr17:57183929-57184910	GM12891	blood:	n/a	n/a
47	FOXA2	chr17:57183854-57184711	A549	lung:	n/a	n/a
48	ZNF143	chr17:57184039-57184839	H1-hESC	embryonic stem cell:	n/a	n/a
49	MAX	chr17:57183660-57184894	GM12878	blood:	n/a	chr17:57183928-57183937 chr17:57183761-57183771
50	FOSL2	chr17:57183912-57184952	A549	lung:	n/a	chr17:57183919-57183933

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr17:57184151-57184201	BJ	skin:	n/a
2	chr17:57184151-57184201	ProgFib	skin:	n/a
3	chr17:57184151-57184201	MCF10A-Er-Src	breast:	n/a
4	chr17:57184151-57184201	HNPCEpiC	eye:	n/a
5	chr17:57184151-57184201	HEEpiC	esophagus:	n/a
6	chr17:57184151-57184201	PFSK-1	brain:	n/a
7	chr17:57184151-57184201	HEK293	kidney:	embryo
8	chr17:57184151-57184201	SAEC	small airway:	n/a
9	chr17:57184151-57184201	BE2_C	brain:	n/a
10	chr17:57184151-57184201	NB4	blood:	n/a
11	chr17:57184151-57184201	HPAEpiC	pulmonary alveolar:	n/a
12	chr17:57184151-57184201	LNCaP	prostate:	n/a
13	chr17:57184151-57184201	HRE	kidney:	n/a
14	chr17:57184151-57184201	PrEC	prostate:	n/a
15	chr17:57184151-57184201	HepG2	liver:	n/a
16	chr17:57184151-57184201	AG10803	skin:	n/a
17	chr17:57184151-57184201	GM06990	blood:	n/a
18	chr17:57184151-57184201	Hepatocyte	liver:	n/a
19	chr17:57184151-57184201	RPTEC	kidney:	n/a
20	chr17:57184151-57184201	MCF-7	breast:	n/a
21	chr17:57184151-57184201	HCF	heart:	n/a
22	chr17:57184151-57184201	NT2-D1	testis:	n/a
23	chr17:57184151-57184201	ovcar-3	ovarian:	n/a
24	chr17:57184151-57184201	AG09319	gingival:	n/a
25	chr17:57184151-57184201	CMK	blood:	n/a
26	chr17:57184151-57184201	T-47D	breast:	n/a
27	chr17:57184151-57184201	H1-hESC	embryonic stem cell:	embryo
28	chr17:57184151-57184201	NHDF-neo	bronchial:	n/a
29	chr17:57184151-57184201	ECC-1	luminal epithelium:	n/a
30	chr17:57184151-57184201	HCT-116	colon:	n/a
31	chr17:57184151-57184201	HRPEpiC	eye:	n/a
32	chr17:57184151-57184201	SK-N-SH	brain:	n/a
33	chr17:57184151-57184201	AG04449	skin:	fetal
34	chr17:57184151-57184201	HIPEpiC	eye:	n/a
35	chr17:57184151-57184201	HMEC	breast:	n/a
36	chr17:57184151-57184201	HCPEpiC	choroid plexus:	n/a
37	chr17:57184151-57184201	HRCEpiC	kidney:	n/a
38	chr17:57184151-57184201	IMR90	lung:	fetal
39	chr17:57184151-57184201	NHBE	bronchial:	n/a
40	chr17:57184151-57184201	SK-N-MC	brain:	n/a
41	chr17:57184151-57184201	HUVEC	blood vessel:	n/a
42	chr17:57184151-57184201	AG04450	lung:	fetal
43	chr17:57184151-57184201	GM19239	blood:	n/a
44	chr17:57184151-57184201	Jurkat	blood:	n/a
45	chr17:57184151-57184201	A549	lung:	n/a
46	chr17:57184151-57184201	U87	brain:	n/a
47	chr17:57184151-57184201	K562	blood:	n/a
48	chr17:57184151-57184201	PANC-1	pancreas:	n/a
49	chr17:57184151-57184201	AoSMC	blood vessel:	n/a
50	chr17:57184151-57184201	HL-60	blood:	n/a

(count:62 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr17:57089102..57091054-chr17:57183704..57185617,2	MCF-7	breast:
2	chr17:57184002..57184595-chr8:38089241..38090037,2	Hela-S3	cervix:
3	chr12:52463739..52464515-chr17:57183555..57184211,2	Hela-S3	cervix:
4	chr1:169862567..169863163-chr17:57183700..57184660,2	Hela-S3	cervix:
5	chr17:57182714..57184339-chr20:55840457..55843240,2	MCF-7	breast:
6	chr17:56594256..56597406-chr17:57182255..57186228,4	K562	blood:
7	chr17:56735072..56738484-chr17:57181626..57187465,12	MCF-7	breast:
8	chr1:28906850..28909563-chr17:57182513..57184408,2	MCF-7	breast:
9	chr1:160990813..160992339-chr17:57183553..57186254,2	MCF-7	breast:
10	chr17:56708039..56712144-chr17:57181830..57184716,4	MCF-7	breast:
11	chr17:57184109..57186033-chrX:134029019..134031159,2	MCF-7	breast:
12	chr17:57182556..57185500-chr8:117885243..117887257,2	MCF-7	breast:
13	chr17:57182746..57185047-chr17:65240971..65242827,2	MCF-7	breast:
14	chr17:56755117..56758223-chr17:57182145..57185089,4	MCF-7	breast:
15	chr17:57183280..57185140-chr17:57914627..57916398,12	MCF-7	breast:
16	chr17:57181740..57185864-chr17:57285843..57288823,5	K562	blood:
17	chr17:57181661..57184920-chr17:57296227..57299938,4	MCF-7	breast:
18	chr17:57183928..57184741-chr5:172198165..172198987,2	Hela-S3	cervix:
19	chr17:57183920..57185873-chr20:52209285..52211377,2	MCF-7	breast:
20	chr17:57095356..57201201-chr17:57905452..57953516,1644	MCF-7	breast:
21	chr17:57183530..57184497-chr17:57914448..57915367,3	MCF-7	breast:
22	chr17:57113105..57201250-chr17:57905452..57952793,1492	MCF-7	breast:
23	chr17:57183384..57184174-chr20:47662572..47663141,2	Hela-S3	cervix:
24	chr17:57181561..57185974-chr17:57968409..57971978,11	MCF-7	breast:
25	chr17:57182605..57184308-chr5:67510766..67513738,2	MCF-7	breast:
26	chr17:57183226..57185284-chr17:57227032..57228763,2	MCF-7	breast:
27	chr17:57183542..57185457-chr17:57914120..57916088,10	MCF-7	breast:
28	chr17:56594719..56596602-chr17:57182316..57185290,3	MCF-7	breast:
29	chr17:57182396..57186542-chr17:57229642..57234395,10	MCF-7	breast:
30	chr17:57182695..57184596-chr17:57962308..57965102,2	MCF-7	breast:
31	chr17:57182509..57184256-chr17:58677347..58679347,2	MCF-7	breast:
32	chr17:57183652..57184704-chr17:57231672..57232786,4	MCF-7	breast:
33	chr17:57182611..57184630-chr2:206948377..206949909,2	MCF-7	breast:
34	chr17:56770827..56772419-chr17:57182909..57185589,2	MCF-7	breast:
35	chr17:57183711..57184494-chr17:57969955..57970906,4	MCF-7	breast:
36	chr17:57182840..57186540-chr7:104651703..104654637,4	MCF-7	breast:
37	chr17:57182648..57184264-chr20:52207978..52210816,2	MCF-7	breast:
38	chr17:57181517..57184200-chr3:161086879..161089854,2	MCF-7	breast:
39	chr11:62622772..62623760-chr17:57183716..57184314,2	MCF-7	breast:
40	chr17:57183317..57186010-chr2:174829178..174831765,2	MCF-7	breast:
41	chr17:57183794..57185492-chr17:59476524..59479346,2	MCF-7	breast:
42	chr11:2289545..2292313-chr17:57182846..57185081,2	MCF-7	breast:
43	chr17:57182741..57185324-chr17:57286919..57289106,3	MCF-7	breast:
44	chr17:57181543..57184200-chr17:59488935..59490643,2	MCF-7	breast:
45	chr1:205090841..205092733-chr17:57181641..57184309,2	MCF-7	breast:
46	chr17:57182168..57184264-chr8:128494106..128496504,2	MCF-7	breast:
47	chr17:57182828..57185164-chr17:57697020..57699270,2	MCF-7	breast:
48	chr17:57182699..57185513-chr17:57229234..57234346,6	K562	blood:
49	chr17:7589652..7591800-chr17:57183984..57186626,2	MCF-7	breast:
50	chr17:56706897..56710474-chr17:57182041..57185772,3	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PRR11-1	chr17:57183959-57184952	ENSG00000224738.1

No data

Variant related genes	Relation type
TRIM37	TF binding region
TRIM37	CpG island
ENSG00000207996	Chromatin interaction
ENSG00000117222	Chromatin interaction
ENSG00000182628	Chromatin interaction
ENSG00000221299	Chromatin interaction
ENSG00000255717	Chromatin interaction
ENSG00000262251	Chromatin interaction
ENSG00000101144	Chromatin interaction
ENSG00000227431	Chromatin interaction
ENSG00000135486	Chromatin interaction
ENSG00000068097	Chromatin interaction
ENSG00000197989	Chromatin interaction
ENSG00000198265	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000183734	Chromatin interaction
ENSG00000108443	Chromatin interaction
ENSG00000085788	Chromatin interaction
ENSG00000167447	Chromatin interaction
ENSG00000108423	Chromatin interaction
ENSG00000264875	Chromatin interaction
ENSG00000267280	Chromatin interaction
ENSG00000158769	Chromatin interaction
ENSG00000121068	Chromatin interaction
ENSG00000062716	Chromatin interaction
ENSG00000200997	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000141367	Chromatin interaction
ENSG00000141510	Chromatin interaction
ENSG00000172845	Chromatin interaction
ENSG00000000457	Chromatin interaction
ENSG00000123395	Chromatin interaction
ENSG00000154174	Chromatin interaction
ENSG00000108389	Chromatin interaction
ENSG00000187013	Chromatin interaction
ENSG00000164754	Chromatin interaction
ENSG00000196542	Chromatin interaction
ENSG00000168003	Chromatin interaction
ENSG00000200463	Chromatin interaction
ENSG00000206535	Chromatin interaction
ENSG00000227946	Chromatin interaction
ENSG00000202077	Chromatin interaction
ENSG00000267416	Chromatin interaction
ENSG00000141499	Chromatin interaction
ENSG00000108395	Chromatin interaction
ENSG00000108384	Chromatin interaction
ENSG00000120129	Chromatin interaction
ENSG00000153982	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000145675	Chromatin interaction
ENSG00000170836	Chromatin interaction
ENSG00000068489	Chromatin interaction
ENSG00000034510	Chromatin interaction
ENSG00000246228	Chromatin interaction
ENSG00000201524	Chromatin interaction
ENSG00000199004	Chromatin interaction
ENSG00000121101	Chromatin interaction
ENSG00000005483	Chromatin interaction
ENSG00000226308	Chromatin interaction
ENSG00000267131	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000264672	Chromatin interaction
ENSG00000171940	Chromatin interaction
ENSG00000228393	Chromatin interaction
ENSG00000270264	Chromatin interaction
ENSG00000124207	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10853008	0.81[CEU][hapmap]
rs11079368	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11654986	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11656413	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11658694	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11658974	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11868348	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12051897	0.82[GIH][hapmap];0.82[EUR][1000 genomes]
rs12452313	0.88[CEU][hapmap];0.83[CHB][hapmap]
rs12603238	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12936058	0.96[CEU][hapmap];0.90[CHB][hapmap]
rs12947785	0.96[CEU][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs12948746	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1588322	1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap]
rs1871751	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1967415	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2055779	1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap]
rs2158966	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2333410	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3826353	0.92[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4372750	1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap]
rs4598970	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4932693	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56297715	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56360354	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57869245	0.84[ASN][1000 genomes]
rs58092632	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6416932	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6416933	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6503887	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap]
rs6503890	0.96[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs6503893	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6503894	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6503896	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7207693	1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap]
rs7208505	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7213269	0.86[YRI][hapmap]
rs7214098	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7214335	0.91[CEU][hapmap];0.86[YRI][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7214892	0.83[EUR][1000 genomes]
rs7217845	0.86[YRI][hapmap]
rs7218105	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap]
rs72628394	0.86[ASN][1000 genomes]
rs7502947	0.87[MEX][hapmap]
rs8067264	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8069033	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8071280	1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs8072182	0.86[YRI][hapmap]
rs8072712	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8076121	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap]
rs8081297	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8081967	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8082544	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8182277	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9303403	0.86[YRI][hapmap]
rs9892425	0.86[YRI][hapmap]
rs9898916	0.91[CEU][hapmap];0.84[CHB][hapmap]
rs9911583	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv908643	chr17:56803028-57249010	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
2	nsv908644	chr17:56803028-57371432	Strong transcription Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	238 gene(s)	inside rSNPs	diseases
3	esv3335958	chr17:56849544-57385398	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	233 gene(s)	inside rSNPs	diseases
4	nsv908645	chr17:56857281-57208752	Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	150 gene(s)	inside rSNPs	diseases
5	nsv1065063	chr17:56954121-57346694	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
6	nsv1064384	chr17:57049519-57346694	Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	219 gene(s)	inside rSNPs	diseases
7	nsv908646	chr17:57061238-57255810	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	206 gene(s)	inside rSNPs	diseases
8	nsv833499	chr17:57070693-57288410	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	208 gene(s)	inside rSNPs	diseases
9	nsv1066388	chr17:57082013-57339981	Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	209 gene(s)	inside rSNPs	diseases
10	esv2758462	chr17:57082579-57425634	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	213 gene(s)	inside rSNPs	diseases
11	esv2758699	chr17:57082579-57425634	Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	213 gene(s)	inside rSNPs	diseases
12	nsv1066467	chr17:57117682-57338731	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	200 gene(s)	inside rSNPs	diseases
13	nsv1057209	chr17:57117682-57742240	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	240 gene(s)	inside rSNPs	diseases
14	nsv543396	chr17:57117682-57742240	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	240 gene(s)	inside rSNPs	diseases
15	nsv1066788	chr17:57126446-57344129	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	193 gene(s)	inside rSNPs	diseases
16	nsv482858	chr17:57136446-57288615	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	184 gene(s)	inside rSNPs	diseases
17	nsv908647	chr17:57165097-57290383	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	173 gene(s)	inside rSNPs	diseases
18	nsv908648	chr17:57165097-57322954	Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	179 gene(s)	inside rSNPs	diseases
19	nsv1063542	chr17:57179669-57569673	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
20	nsv543397	chr17:57179669-57569673	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
21	nsv1062959	chr17:57179669-57680772	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
22	nsv828069	chr17:57183476-57184487	Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs7503190	TRIM37	cis	Muscle Skeletal	GTEx
rs7503190	TRIM37	cis	lymphoblastoid	seeQTL
rs7503190	TRIM37	cis	Adipose Subcutaneous	GTEx
rs7503190	TRIM37	cis	Whole Blood	GTEx
rs7503190	RAD51C	Cis_1M	lymphoblastoid	RTeQTL
rs7503190	RAD51C	cis	lymphoblastoid	seeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:57181600-57185200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
2	chr17:57181800-57185200	Active TSS	Brain Cingulate Gyrus	brain
3	chr17:57182000-57184600	Active TSS	GM12878-XiMat	blood
4	chr17:57182000-57184600	Active TSS	K562	blood
5	chr17:57182000-57185400	Active TSS	Fetal Brain Female	brain
6	chr17:57182200-57184600	Active TSS	Brain Angular Gyrus	brain
7	chr17:57182200-57185400	Active TSS	H1 Cell Line	embryonic stem cell
8	chr17:57182200-57185400	Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr17:57182400-57185800	Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr17:57182600-57184600	Active TSS	Cortex derived primary cultured neurospheres	brain
11	chr17:57182600-57184600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr17:57182600-57184600	Active TSS	Brain Anterior Caudate	brain
13	chr17:57182600-57184600	Active TSS	NHLF	lung
14	chr17:57182600-57185200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr17:57182600-57185200	Active TSS	NHDF-Ad	bronchial
16	chr17:57182800-57184600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr17:57182800-57185000	Active TSS	iPS-15b Cell Line	embryonic stem cell
18	chr17:57182800-57185200	Active TSS	ES-I3 Cell Line	embryonic stem cell
19	chr17:57182800-57185200	Active TSS	HUES6 Cell Line	embryonic stem cell
20	chr17:57182800-57185600	Active TSS	A549	lung
21	chr17:57183000-57184600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr17:57183000-57184600	Active TSS	Brain Inferior Temporal Lobe	brain
23	chr17:57183000-57184600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
24	chr17:57183000-57184600	Active TSS	Fetal Kidney	kidney
25	chr17:57183000-57184600	Active TSS	Rectal Mucosa Donor 29	rectum
26	chr17:57183000-57184800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr17:57183000-57184800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr17:57183000-57184800	Active TSS	HSMMtube	muscle
29	chr17:57183000-57185000	Active TSS	H9 Cell Line	embryonic stem cell
30	chr17:57183000-57185000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr17:57183000-57185000	Active TSS	Right Ventricle	heart
32	chr17:57183000-57185200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr17:57183000-57185200	Active TSS	Fetal Stomach	stomach
34	chr17:57183200-57184600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr17:57183200-57184600	Active TSS	Muscle Satellite Cultured Cells	--
36	chr17:57183200-57184600	Active TSS	Fetal Intestine Small	intestine
37	chr17:57183200-57184600	Active TSS	Pancreatic Islets	Pancreatic Islet
38	chr17:57183200-57184600	Active TSS	Fetal Muscle Leg	muscle
39	chr17:57183200-57184600	Active TSS	Placenta	Placenta
40	chr17:57183200-57184600	Active TSS	Fetal Thymus	thymus
41	chr17:57183200-57184600	Active TSS	Rectal Smooth Muscle	rectum
42	chr17:57183200-57184800	Active TSS	Aorta	Aorta
43	chr17:57183200-57184800	Active TSS	Colon Smooth Muscle	Colon
44	chr17:57183200-57184800	Active TSS	Fetal Intestine Large	intestine
45	chr17:57183200-57185000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr17:57183200-57185000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr17:57183200-57185000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr17:57183200-57185000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr17:57183200-57185000	Active TSS	Fetal Muscle Trunk	muscle
50	chr17:57183200-57185000	Active TSS	Ovary	ovary

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