Variant report

Variant	rs11656942
Chromosome Location	chr17:66820608-66820609
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:66819799..66822410-chr17:66827095..66829795,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ABCA8-1	chr17:66820396-66820947	XLOC_012559

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10512519	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11655986	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12451366	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12601591	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12602875	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16973416	0.82[EUR][1000 genomes]
rs4147997	0.82[EUR][1000 genomes]
rs4148011	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56079215	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58601251	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62087820	0.82[EUR][1000 genomes]
rs6501769	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6501788	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7215620	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7216643	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7217691	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7219718	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8067199	0.97[ASN][1000 genomes]
rs8071366	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8071389	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8076099	0.82[EUR][1000 genomes]
rs8079580	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9913071	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv908694	chr17:66802992-66913936	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66817600-66828800	Weak transcription	Right Atrium	heart
2	chr17:66818600-66821400	Enhancers	HepG2	liver
3	chr17:66818600-66825600	Weak transcription	Fetal Lung	lung
4	chr17:66819400-66826600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr17:66819800-66820800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr17:66820200-66827400	Weak transcription	Adipose Nuclei	Adipose
7	chr17:66820600-66820800	Enhancers	Liver	Liver

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