Variant report
| Variant | rs56079215 |
|---|---|
| Chromosome Location | chr17:66856945-66856946 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr17:66850995..66852719-chr17:66855474..66857200,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10512519 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11655986 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11656942 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12451366 | 0.99[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12601591 | 0.88[EUR][1000 genomes] |
| rs12602875 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs16973416 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs4147997 | 0.80[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs4148011 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs58601251 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs62087820 | 0.80[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs6501769 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6501788 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7215620 | 0.99[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7216643 | 0.88[EUR][1000 genomes] |
| rs7217691 | 0.85[EUR][1000 genomes] |
| rs7219718 | 0.99[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs8067199 | 0.81[ASN][1000 genomes] |
| rs8071366 | 0.99[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs8071389 | 0.88[EUR][1000 genomes] |
| rs8076099 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs8079580 | 0.99[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs9913071 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1067334 | chr17:66695039-67221585 | Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv543411 | chr17:66695039-67221585 | Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 16 gene(s) | inside rSNPs | diseases |
| 3 | nsv908694 | chr17:66802992-66913936 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr17:66850400-66864000 | Weak transcription | Ovary | ovary |
| 2 | chr17:66856600-66858200 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
