Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:111565306..111566939-chr17:66828153..66829672,2	MCF-7	breast:
2	chr17:66819799..66822410-chr17:66827095..66829795,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10512519	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11655986	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11656942	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12451366	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12602875	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17744211	0.80[ASN][1000 genomes]
rs2197245	0.80[ASN][1000 genomes]
rs2218352	0.80[ASN][1000 genomes]
rs4148011	0.82[EUR][1000 genomes]
rs4968965	0.80[ASN][1000 genomes]
rs56079215	0.88[EUR][1000 genomes]
rs58601251	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6501769	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6501788	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6501792	0.80[ASN][1000 genomes]
rs7215620	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7216643	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7217691	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7219718	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8067199	0.84[ASN][1000 genomes]
rs8071366	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8071389	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8079580	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9913071	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv908694	chr17:66802992-66913936	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66817600-66828800	Weak transcription	Right Atrium	heart
2	chr17:66826600-66829200	Enhancers	Fetal Lung	lung
3	chr17:66826600-66830000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr17:66826800-66828600	Weak transcription	Ovary	ovary
5	chr17:66826800-66831200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr17:66827000-66830800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr17:66827400-66829000	Enhancers	Left Ventricle	heart
8	chr17:66827400-66830200	Enhancers	Adipose Nuclei	Adipose
9	chr17:66827800-66829200	Enhancers	Fetal Muscle Leg	muscle
10	chr17:66828000-66829000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr17:66828000-66829200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr17:66828200-66829600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr17:66828200-66829600	Active TSS	Fetal Brain Male	brain
14	chr17:66828200-66833800	Weak transcription	Fetal Muscle Trunk	muscle

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