Variant report

Variant	rs17744211
Chromosome Location	chr17:66835832-66835833
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10852765	0.80[CEU][hapmap];0.84[GIH][hapmap];0.96[MEX][hapmap];0.87[TSI][hapmap]
rs11651365	0.81[CEU][hapmap]
rs12601591	0.80[ASN][1000 genomes]
rs12952511	0.82[CEU][hapmap]
rs1443264	0.83[EUR][1000 genomes]
rs1470286	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2197245	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2218352	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3744493	0.80[CEU][hapmap];0.86[GIH][hapmap];0.96[MEX][hapmap];0.87[TSI][hapmap]
rs3744494	0.80[CEU][hapmap];0.82[GIH][hapmap];0.96[MEX][hapmap];0.86[TSI][hapmap]
rs3744496	0.80[CEU][hapmap];0.95[MEX][hapmap];0.86[TSI][hapmap]
rs4147313	0.80[CEU][hapmap];0.84[GIH][hapmap];0.96[MEX][hapmap];0.87[TSI][hapmap]
rs4147314	0.80[CEU][hapmap];0.84[GIH][hapmap];0.96[MEX][hapmap];0.87[TSI][hapmap]
rs4147993	0.87[MEX][hapmap]
rs4147998	0.80[CEU][hapmap]
rs4148010	0.80[MEX][hapmap]
rs4968824	0.81[CEU][hapmap]
rs4968965	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4968971	0.80[CEU][hapmap]
rs4968972	0.82[GIH][hapmap];0.96[MEX][hapmap];0.87[TSI][hapmap]
rs6501792	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7212641	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7212951	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7503035	0.80[CEU][hapmap]
rs8071389	0.80[ASN][1000 genomes]
rs8074769	0.80[CEU][hapmap];0.82[GIH][hapmap];0.96[MEX][hapmap];0.87[TSI][hapmap]
rs9893368	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs991209	0.80[CEU][hapmap]
rs991210	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv908694	chr17:66802992-66913936	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs17744211	ICAM2	cis	cerebellum	SCAN
rs17744211	ABCA8	cis	cerebellum	SCAN
rs17744211	ACE	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66829200-66836200	Weak transcription	Fetal Muscle Leg	muscle
2	chr17:66830200-66839600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr17:66831400-66839200	Weak transcription	Ovary	ovary
4	chr17:66832800-66836000	Weak transcription	Adipose Nuclei	Adipose
5	chr17:66834400-66845800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr17:66835800-66836200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr17:66835800-66836800	Enhancers	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links