Variant report

Variant	rs1443264
Chromosome Location	chr17:66832958-66832959
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12451146	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1373065	0.82[ASN][1000 genomes]
rs1470286	0.81[EUR][1000 genomes]
rs16973376	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17744211	0.83[EUR][1000 genomes]
rs2009065	0.93[ASN][1000 genomes]
rs2016785	0.85[ASN][1000 genomes]
rs2197245	0.83[EUR][1000 genomes]
rs2218352	0.83[EUR][1000 genomes]
rs3826429	0.82[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs4148009	0.85[CEU][hapmap];0.91[YRI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4148010	0.88[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4968823	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4968960	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4968961	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4968965	0.80[EUR][1000 genomes]
rs6501834	0.82[ASN][1000 genomes]
rs7207042	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7212641	0.83[EUR][1000 genomes]
rs7212951	0.83[EUR][1000 genomes]
rs7216979	0.89[ASN][1000 genomes]
rs7218376	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7218530	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8071901	0.92[ASN][1000 genomes]
rs9893368	0.83[EUR][1000 genomes]
rs9893385	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9895870	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9896139	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9897551	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9898982	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9914229	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9914659	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv908694	chr17:66802992-66913936	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66828200-66833800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr17:66829200-66836200	Weak transcription	Fetal Muscle Leg	muscle
3	chr17:66830200-66839600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr17:66831400-66839200	Weak transcription	Ovary	ovary
5	chr17:66832800-66836000	Weak transcription	Adipose Nuclei	Adipose

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