Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PRKAR1A-6	chr17:66819564-66820538	NONHSAT055556

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12451146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1443264	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2009065	0.90[ASN][1000 genomes]
rs2016785	0.81[ASN][1000 genomes]
rs3826429	0.81[ASN][1000 genomes]
rs4148010	0.81[ASN][1000 genomes]
rs4968823	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4968960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4968961	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7207042	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7216979	0.86[ASN][1000 genomes]
rs7218376	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7218530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8071901	0.89[ASN][1000 genomes]
rs9893385	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9895870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9897551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9898982	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9914229	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9914659	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv908694	chr17:66802992-66913936	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66817000-66819800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr17:66817000-66819800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr17:66817200-66819800	Enhancers	Fetal Muscle Leg	muscle
4	chr17:66817600-66828800	Weak transcription	Right Atrium	heart
5	chr17:66818600-66820600	Flanking Active TSS	Liver	Liver
6	chr17:66818600-66821400	Enhancers	HepG2	liver
7	chr17:66818600-66825600	Weak transcription	Fetal Lung	lung
8	chr17:66818800-66819600	Weak transcription	Psoas Muscle	Psoas
9	chr17:66818800-66819800	Weak transcription	Fetal Heart	heart
10	chr17:66819200-66820200	Active TSS	Adipose Nuclei	Adipose
11	chr17:66819400-66826600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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