Variant report

Variant	rs9898982
Chromosome Location	chr17:66818534-66818535
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:66808533..66810777-chr17:66816260..66818804,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12451146	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1443264	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2165838	0.89[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs4968823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4968960	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4968961	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7207042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7218376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7218530	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9893385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9895870	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9896139	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9897551	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9914229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9914659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv908694	chr17:66802992-66913936	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66814800-66818600	Enhancers	Liver	Liver
2	chr17:66816000-66818600	Enhancers	Brain Hippocampus Middle	brain
3	chr17:66816600-66819200	Enhancers	NHLF	lung
4	chr17:66816800-66819400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr17:66816800-66819400	Enhancers	NH-A	brain
6	chr17:66817000-66818800	Enhancers	Brain Cingulate Gyrus	brain
7	chr17:66817000-66818800	Enhancers	HSMMtube	muscle
8	chr17:66817000-66819000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr17:66817000-66819000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr17:66817000-66819000	Enhancers	Hela-S3	cervix
11	chr17:66817000-66819200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr17:66817000-66819200	Enhancers	HMEC	breast
13	chr17:66817000-66819400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr17:66817000-66819400	Enhancers	HUVEC	blood vessel
15	chr17:66817000-66819800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr17:66817000-66819800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr17:66817200-66818600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr17:66817200-66818800	Enhancers	HSMM	muscle
19	chr17:66817200-66819000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr17:66817200-66819200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr17:66817200-66819200	Enhancers	NHDF-Ad	bronchial
22	chr17:66817200-66819400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr17:66817200-66819800	Enhancers	Fetal Muscle Leg	muscle
24	chr17:66817400-66818600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr17:66817400-66818800	Enhancers	Fetal Heart	heart
26	chr17:66817400-66818800	Enhancers	Osteobl	bone
27	chr17:66817600-66818600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr17:66817600-66818600	Enhancers	Fetal Lung	lung
29	chr17:66817600-66818600	Weak transcription	Psoas Muscle	Psoas
30	chr17:66817600-66818600	Flanking Active TSS	HepG2	liver
31	chr17:66817600-66818800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr17:66817600-66819000	Enhancers	NHEK	skin
33	chr17:66817600-66828800	Weak transcription	Right Atrium	heart
34	chr17:66817800-66818600	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr17:66817800-66818600	Enhancers	Adipose Nuclei	Adipose
36	chr17:66817800-66819000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr17:66818000-66818800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr17:66818000-66818800	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr17:66818200-66819200	Enhancers	A549	lung
40	chr17:66818400-66818600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
41	chr17:66818400-66819200	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links