Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11652518	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12451146	0.81[ASN][1000 genomes]
rs1373065	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1443264	0.85[ASN][1000 genomes]
rs16973376	0.88[ASN][1000 genomes]
rs2009065	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2053586	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3826429	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4148009	0.90[ASN][1000 genomes]
rs4148010	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs4148012	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4968960	0.81[ASN][1000 genomes]
rs6501832	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6501834	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7216979	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7218530	0.81[ASN][1000 genomes]
rs8071901	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9895870	0.81[ASN][1000 genomes]
rs9896139	0.81[ASN][1000 genomes]
rs9897551	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv908694	chr17:66802992-66913936	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66850400-66864000	Weak transcription	Ovary	ovary
2	chr17:66856600-66858200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr17:66857000-66858200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr17:66857200-66858200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr17:66857200-66858600	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr17:66857200-66858600	Enhancers	HUVEC	blood vessel
7	chr17:66857400-66857800	Enhancers	Brain Hippocampus Middle	brain
8	chr17:66857400-66858000	Enhancers	Brain Anterior Caudate	brain
9	chr17:66857400-66858200	Enhancers	Brain Cingulate Gyrus	brain
10	chr17:66857600-66858000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr17:66857600-66858200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr17:66857600-66858200	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr17:66857600-66858200	Enhancers	Brain Substantia Nigra	brain
14	chr17:66857600-66858200	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr17:66857600-66858200	Enhancers	Small Intestine	intestine

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