Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11652518	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12451146	0.90[ASN][1000 genomes]
rs1373065	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1443264	0.93[ASN][1000 genomes]
rs2016785	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2053586	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3826429	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4148009	0.82[ASN][1000 genomes]
rs4148010	0.86[ASN][1000 genomes]
rs4148012	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4968960	0.90[ASN][1000 genomes]
rs6501832	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6501834	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7216979	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7218530	0.89[ASN][1000 genomes]
rs8071901	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9895870	0.90[ASN][1000 genomes]
rs9896139	0.90[ASN][1000 genomes]
rs9897551	0.90[ASN][1000 genomes]
rs9914229	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv908694	chr17:66802992-66913936	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66845600-66850600	Enhancers	Fetal Muscle Leg	muscle
2	chr17:66846200-66851200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr17:66846400-66849400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr17:66846800-66849000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr17:66847000-66849000	Weak transcription	NHDF-Ad	bronchial
6	chr17:66847000-66849200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr17:66847200-66849200	Weak transcription	Adipose Nuclei	Adipose
8	chr17:66847600-66849600	Weak transcription	Ovary	ovary
9	chr17:66847800-66849200	Weak transcription	Fetal Stomach	stomach
10	chr17:66847800-66849400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr17:66848000-66849600	Weak transcription	Fetal Lung	lung

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