Variant report

Variant	rs11661711
Chromosome Location	chr18:9111137-9111138
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:9104527..9106876-chr18:9108422..9111915,5	MCF-7	breast:
2	chr18:9102513..9104198-chr18:9110210..9112886,3	MCF-7	breast:
3	chr18:9109653..9114484-chr18:9134215..9138699,5	K562	blood:
4	chr18:9109185..9111823-chr18:9131612..9133960,2	K562	blood:
5	chr18:9109653..9113477-chr18:9134878..9138733,4	K562	blood:
6	chr18:9110356..9113174-chr18:9191057..9192849,2	K562	blood:

Variant related genes	Relation type
ENSG00000101745	Chromatin interaction
ENSG00000266053	Chromatin interaction
ENSG00000178127	Chromatin interaction
ENSG00000265257	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11660603	0.85[CHD][hapmap]
rs12607307	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12958093	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs1472944	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17413793	0.96[CEU][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[TSI][hapmap]
rs1893198	0.90[CHD][hapmap];0.91[JPT][hapmap]
rs2155707	0.96[CEU][hapmap];0.91[JPT][hapmap]
rs4078337	1.00[CEU][hapmap];0.91[JPT][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4131992	1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap]
rs4148965	0.83[CHB][hapmap];0.90[CHD][hapmap];0.82[MEX][hapmap];0.81[ASN][1000 genomes]
rs4148966	0.92[ASN][1000 genomes]
rs4148967	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4603624	0.96[CEU][hapmap];0.91[JPT][hapmap]
rs4797356	0.80[ASW][hapmap];1.00[CEU][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4797361	0.91[JPT][hapmap]
rs4798766	0.82[CEU][hapmap]
rs4798771	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs4798772	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs4798776	0.94[CEU][hapmap];0.81[JPT][hapmap];0.91[YRI][hapmap];0.91[EUR][1000 genomes]
rs4798778	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4798786	0.90[CHD][hapmap];0.91[JPT][hapmap]
rs4798791	0.96[CEU][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap]
rs56046470	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6417048	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6506649	0.91[JPT][hapmap]
rs7228251	0.96[CEU][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap]
rs7504137	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7504603	0.95[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.91[YRI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7505120	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7506291	0.90[CHD][hapmap];0.95[JPT][hapmap]
rs8087306	0.82[JPT][hapmap]
rs8089693	0.90[CHD][hapmap];0.91[JPT][hapmap]
rs894755	0.95[CEU][hapmap];0.91[JPT][hapmap]
rs9652952	0.84[JPT][hapmap]
rs977581	1.00[CEU][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9945360	1.00[CEU][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9946468	0.96[CEU][hapmap];0.91[JPT][hapmap];0.87[YRI][hapmap]
rs9946695	0.90[CHD][hapmap];0.87[JPT][hapmap]
rs9947027	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9948560	0.94[CEU][hapmap];0.88[JPT][hapmap]
rs9952006	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9960129	0.96[CEU][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap]
rs9966631	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv916373	chr18:9026803-9592201	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv431971	chr18:9081185-9326852	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv1056258	chr18:9094498-9181498	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9103400-9111400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr18:9103400-9111600	Weak transcription	Pancreas	Pancrea
3	chr18:9103400-9113400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr18:9103400-9113400	Weak transcription	Spleen	Spleen
5	chr18:9103800-9117000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr18:9104400-9116800	Weak transcription	Esophagus	oesophagus
7	chr18:9104400-9117000	Weak transcription	Lung	lung
8	chr18:9104400-9130000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr18:9104600-9111600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr18:9104600-9112200	Weak transcription	Fetal Muscle Trunk	muscle
11	chr18:9105000-9112600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr18:9106200-9111400	Enhancers	HepG2	liver
13	chr18:9106200-9111800	Enhancers	Duodenum Mucosa	Duodenum
14	chr18:9106200-9111800	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr18:9106200-9116800	Weak transcription	Placenta	Placenta
16	chr18:9106200-9117000	Enhancers	Colon Smooth Muscle	Colon
17	chr18:9106200-9123200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr18:9107000-9111400	Weak transcription	Right Atrium	heart
19	chr18:9107000-9113200	Weak transcription	HSMMtube	muscle
20	chr18:9107000-9113400	Weak transcription	Fetal Muscle Leg	muscle
21	chr18:9107000-9135200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr18:9107200-9111200	Enhancers	Muscle Satellite Cultured Cells	--
23	chr18:9107200-9111600	Enhancers	Liver	Liver
24	chr18:9107400-9111400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr18:9107400-9113200	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr18:9107400-9116000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr18:9107400-9135400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr18:9107600-9116400	Weak transcription	HMEC	breast
29	chr18:9107600-9123200	Weak transcription	Thymus	Thymus
30	chr18:9107800-9112000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr18:9107800-9114200	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr18:9107800-9116800	Enhancers	Primary B cells from peripheral blood	blood
33	chr18:9107800-9116800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr18:9107800-9134600	Weak transcription	Fetal Brain Male	brain
35	chr18:9108000-9111200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr18:9108000-9111400	Weak transcription	Fetal Thymus	thymus
37	chr18:9108000-9113400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr18:9108000-9114800	Enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr18:9108000-9116600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr18:9108000-9117400	Weak transcription	Fetal Kidney	kidney
41	chr18:9108200-9123000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr18:9108200-9127200	Weak transcription	Fetal Brain Female	brain
43	chr18:9108600-9114000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
44	chr18:9108800-9111200	Enhancers	Small Intestine	intestine
45	chr18:9109000-9111200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr18:9109000-9111200	Enhancers	Fetal Intestine Large	intestine
47	chr18:9109000-9111200	Enhancers	Fetal Lung	lung
48	chr18:9109000-9111200	Enhancers	Stomach Mucosa	stomach
49	chr18:9109000-9111400	Enhancers	Adipose Nuclei	Adipose
50	chr18:9109000-9111400	Enhancers	Brain Hippocampus Middle	brain

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