Variant report

Variant	rs4797356
Chromosome Location	chr18:9149437-9149438
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:9142518..9147121-chr18:9149107..9151760,6	K562	blood:
2	chr18:9021031..9023837-chr18:9149339..9151203,2	K562	blood:
3	chr18:9136650..9138896-chr18:9149233..9152038,3	MCF-7	breast:
4	chr18:9143163..9146307-chr18:9148846..9151084,3	K562	blood:
5	chr18:9072068..9073744-chr18:9148593..9150663,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000101745	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10451358	0.90[CHD][hapmap]
rs11660603	0.84[CHD][hapmap]
rs11661711	0.80[ASW][hapmap];1.00[CEU][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12607307	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12958093	1.00[CEU][hapmap];0.91[YRI][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1443596	0.90[CHD][hapmap]
rs1472944	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17413793	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap]
rs1893198	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs2155707	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs34452937	0.82[ASN][1000 genomes]
rs4078337	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4130178	0.82[CHB][hapmap]
rs4131992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs4148965	0.87[ASW][hapmap];0.82[MEX][hapmap]
rs4148966	0.86[ASN][1000 genomes]
rs4148967	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4603624	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs4797361	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs4798766	0.82[CEU][hapmap]
rs4798772	0.95[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4798776	0.94[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4798778	0.96[CEU][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4798782	0.82[ASN][1000 genomes]
rs4798785	0.90[CHD][hapmap]
rs4798786	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs4798791	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.80[LWK][hapmap];0.82[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap]
rs56046470	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6417048	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6506644	0.82[CHB][hapmap];0.90[CHD][hapmap]
rs6506648	0.90[CHD][hapmap]
rs6506649	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7228251	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap]
rs7229883	0.81[CHB][hapmap];0.90[CHD][hapmap]
rs7231452	0.90[CHD][hapmap]
rs7235514	0.82[CHB][hapmap];0.90[CHD][hapmap]
rs7504137	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7504603	0.95[CEU][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7505120	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7506291	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs8083078	0.81[CHB][hapmap];0.81[ASN][1000 genomes]
rs8087306	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs8089693	0.91[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs8092135	0.90[CHD][hapmap]
rs8092613	0.82[CHB][hapmap]
rs874250	0.86[CHB][hapmap];0.90[CHD][hapmap]
rs894755	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs906807	0.82[CHB][hapmap]
rs9652952	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs977581	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9944905	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9945360	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9946468	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap]
rs9946695	0.91[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap]
rs9947027	1.00[CEU][hapmap];0.95[JPT][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9948560	0.94[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs9952006	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9959998	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9960129	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.80[LWK][hapmap];0.82[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap]
rs9966631	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs998171	0.90[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916373	chr18:9026803-9592201	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv431971	chr18:9081185-9326852	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1056258	chr18:9094498-9181498	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv909364	chr18:9114096-9186684	Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv543641	chr18:9120450-9181498	Genic enhancers Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv543642	chr18:9133164-9191739	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv1056407	chr18:9144345-9553764	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9138200-9162200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr18:9138600-9154200	Weak transcription	Lung	lung
3	chr18:9138600-9156200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr18:9138800-9150000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr18:9138800-9150400	Enhancers	Primary B cells from peripheral blood	blood
6	chr18:9140000-9151600	Weak transcription	Right Ventricle	heart
7	chr18:9140000-9162000	Weak transcription	Thymus	Thymus
8	chr18:9140000-9163000	Weak transcription	Fetal Intestine Large	intestine
9	chr18:9140200-9155400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr18:9140800-9160200	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr18:9141600-9153000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr18:9141600-9161000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr18:9142400-9174000	Weak transcription	HSMMtube	muscle
14	chr18:9143400-9150000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr18:9143400-9150400	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr18:9143400-9150600	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr18:9143800-9149600	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr18:9143800-9150600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr18:9143800-9159000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr18:9145400-9154200	Weak transcription	Left Ventricle	heart
21	chr18:9145600-9150600	Enhancers	Primary T cells from cord blood	blood
22	chr18:9145600-9156200	Weak transcription	HMEC	breast
23	chr18:9145800-9154000	Weak transcription	Spleen	Spleen
24	chr18:9146200-9150600	Enhancers	Liver	Liver
25	chr18:9146400-9151600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr18:9146400-9154200	Weak transcription	Right Atrium	heart
27	chr18:9146600-9149800	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr18:9146600-9151600	Weak transcription	Ovary	ovary
29	chr18:9146600-9154200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr18:9146600-9174000	Weak transcription	Esophagus	oesophagus
31	chr18:9146800-9149800	Weak transcription	Aorta	Aorta
32	chr18:9146800-9154200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr18:9147000-9150800	Weak transcription	Small Intestine	intestine
34	chr18:9147800-9150800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr18:9147800-9154400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr18:9147800-9163000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr18:9147800-9165200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr18:9148000-9150000	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr18:9148000-9151600	Weak transcription	NHLF	lung
40	chr18:9148000-9151800	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr18:9148000-9152000	Weak transcription	Brain Germinal Matrix	brain
42	chr18:9148000-9152400	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr18:9148000-9152400	Weak transcription	A549	lung
44	chr18:9148000-9153000	Weak transcription	Brain Hippocampus Middle	brain
45	chr18:9148000-9159400	Weak transcription	Fetal Stomach	stomach
46	chr18:9148000-9159800	Weak transcription	Fetal Intestine Small	intestine
47	chr18:9148000-9160800	Weak transcription	Brain Cingulate Gyrus	brain
48	chr18:9148000-9161800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr18:9148000-9171400	Weak transcription	NHDF-Ad	bronchial
50	chr18:9148000-9173800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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