Variant report

Variant	rs8087306
Chromosome Location	chr18:9094245-9094246
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:9090630..9098108-chr18:9101820..9106792,10	MCF-7	breast:
2	chr18:9079892..9081917-chr18:9092681..9094974,2	MCF-7	breast:
3	chr18:9092915..9099777-chr18:9099997..9106148,17	MCF-7	breast:

Variant related genes	Relation type
ENSG00000265257	Chromatin interaction
ENSG00000178127	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11661711	0.82[JPT][hapmap]
rs17413793	0.91[JPT][hapmap]
rs1893198	0.91[JPT][hapmap]
rs2155707	0.91[JPT][hapmap]
rs4078337	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs4131992	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs4148967	0.86[JPT][hapmap]
rs4603624	0.91[JPT][hapmap]
rs4797356	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs4797361	0.90[JPT][hapmap]
rs4798772	0.86[JPT][hapmap]
rs4798778	0.86[JPT][hapmap]
rs4798786	0.91[JPT][hapmap]
rs4798791	0.91[JPT][hapmap]
rs6506649	0.90[JPT][hapmap]
rs7228251	0.91[JPT][hapmap]
rs7504603	0.81[JPT][hapmap]
rs7506291	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs8089693	0.91[JPT][hapmap]
rs8092878	0.85[CHD][hapmap]
rs894755	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs977581	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs9945360	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs9946468	0.91[JPT][hapmap]
rs9946695	0.86[JPT][hapmap]
rs9947027	0.82[JPT][hapmap]
rs9948560	0.84[JPT][hapmap]
rs9960129	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv916373	chr18:9026803-9592201	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv1832073	chr18:9048118-9094498	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv431971	chr18:9081185-9326852	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9083400-9095000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr18:9083400-9095200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr18:9083400-9097200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr18:9084400-9094800	Weak transcription	Primary B cells from peripheral blood	blood
5	chr18:9091200-9094400	Weak transcription	K562	blood
6	chr18:9091200-9096200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr18:9091600-9094400	Weak transcription	Primary T cells from cord blood	blood
8	chr18:9091800-9095200	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr18:9092200-9094400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr18:9092200-9096000	Enhancers	HUVEC	blood vessel
11	chr18:9092800-9094400	Weak transcription	Stomach Mucosa	stomach
12	chr18:9093000-9094400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr18:9093000-9094400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr18:9093000-9094400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr18:9093000-9094600	Weak transcription	Primary B cells from cord blood	blood
16	chr18:9093000-9095200	Weak transcription	Adipose Nuclei	Adipose
17	chr18:9093000-9095600	Enhancers	Liver	Liver
18	chr18:9093200-9094400	Weak transcription	Fetal Intestine Large	intestine
19	chr18:9093600-9094400	Enhancers	A549	lung
20	chr18:9093600-9094400	Enhancers	NH-A	brain
21	chr18:9093600-9095200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr18:9093600-9095200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr18:9093600-9095200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr18:9093600-9095200	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr18:9093600-9095200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr18:9093600-9095400	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr18:9093600-9096000	Enhancers	Osteobl	bone
28	chr18:9093600-9096200	Enhancers	Hela-S3	cervix
29	chr18:9093800-9095200	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr18:9093800-9095200	Enhancers	Stomach Smooth Muscle	stomach
31	chr18:9093800-9095400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr18:9093800-9096000	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr18:9093800-9096200	Enhancers	Primary neutrophils fromperipheralblood	blood
34	chr18:9093800-9096200	Enhancers	Colon Smooth Muscle	Colon
35	chr18:9094000-9094400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr18:9094000-9094400	Enhancers	Muscle Satellite Cultured Cells	--
37	chr18:9094000-9095000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr18:9094000-9095200	Enhancers	Primary hematopoietic stem cells	blood
39	chr18:9094000-9095200	Enhancers	Duodenum Smooth Muscle	Duodenum
40	chr18:9094000-9095400	Enhancers	Primary T cells fromperipheralblood	blood
41	chr18:9094000-9096000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr18:9094000-9096000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr18:9094000-9096000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
44	chr18:9094000-9096000	Enhancers	Small Intestine	intestine
45	chr18:9094000-9096000	Enhancers	NHLF	lung
46	chr18:9094200-9094600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
47	chr18:9094200-9095200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr18:9094200-9095400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr18:9094200-9095600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr18:9094200-9095600	Enhancers	NHDF-Ad	bronchial

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