Variant report

Variant	rs11663078
Chromosome Location	chr18:45205094-45205095
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11082624	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1875601	0.82[AFR][1000 genomes]
rs2174030	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4424964	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4939856	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8093089	1.00[AMR][1000 genomes]
rs8097276	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9947508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9955855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9958866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9958936	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv2286	chr18:45181897-45226628	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3425854	chr18:45188942-45336590	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45202600-45210800	Enhancers	Primary B cells from cord blood	blood
2	chr18:45203600-45206600	Enhancers	GM12878-XiMat	blood
3	chr18:45205000-45206200	Weak transcription	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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