Variant report

Variant	rs2174030
Chromosome Location	chr18:45198630-45198631
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11082624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11663078	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4424964	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4939856	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8093089	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8097276	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9947508	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9955855	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9958866	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9958936	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv2286	chr18:45181897-45226628	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3425854	chr18:45188942-45336590	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45196400-45201000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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