Variant report

Variant	rs4424964
Chromosome Location	chr18:45182404-45182405
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11082624	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11663078	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2174030	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4939856	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8093089	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8097276	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9947508	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9955855	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9958866	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9958936	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv2286	chr18:45181897-45226628	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45182000-45183200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links