Variant report

Variant	rs11663455
Chromosome Location	chr18:13108593-13108594
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:13105332..13108593-chr18:13112315..13115256,3	K562	blood:

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs11080624	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11080626	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11080627	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11080628	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11659468	0.95[EUR][1000 genomes]
rs11660908	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11661802	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11662528	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11663369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11663399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11663521	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11663778	0.80[ASN][1000 genomes]
rs11664958	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11665378	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11665394	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12604624	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12606033	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12607152	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12607203	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12607323	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12607329	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12607661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12607682	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2282542	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3786160	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs3786162	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3786163	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3786164	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3809907	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3809908	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56913743	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57292913	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57448401	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57906042	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58158805	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58322002	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs58343237	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs58554306	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58558999	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58820551	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59278606	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs59557962	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59962936	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60015020	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60281669	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60444886	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs60669993	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60685477	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60710487	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs60827697	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60945352	0.81[AMR][1000 genomes]
rs60989271	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61364693	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62095829	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs66470739	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66494849	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6650609	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6650616	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6650617	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66559751	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66685204	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66688868	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66929859	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs66935882	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67084247	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67258461	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67334724	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67357574	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67432911	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67565680	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs67675517	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67765196	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67838921	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs67863818	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67868710	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67955156	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67996007	0.81[AMR][1000 genomes]
rs68051414	0.80[ASN][1000 genomes]
rs68169869	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7228940	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7233578	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7236172	0.99[EUR][1000 genomes]
rs7236987	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7243276	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7243536	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7243597	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72636760	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72636761	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8084728	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8088543	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8090759	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8091992	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8092992	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8093363	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8093650	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8094351	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9952452	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062014	chr18:12687210-13183383	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	nsv543655	chr18:12687210-13183383	Flanking Bivalent TSS/Enh Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
3	nsv1057083	chr18:12916779-13207538	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv576524	chr18:12918318-13183609	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv1056593	chr18:12926314-13183383	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	nsv1064364	chr18:12926314-13207686	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
7	nsv833591	chr18:13093777-13253748	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13018600-13117400	Weak transcription	Stomach Mucosa	stomach
2	chr18:13086000-13109400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr18:13086400-13128000	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr18:13089400-13122200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr18:13090600-13109200	Strong transcription	Fetal Muscle Trunk	muscle
6	chr18:13091200-13110800	Weak transcription	Right Atrium	heart
7	chr18:13093000-13109400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr18:13093000-13111200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr18:13093400-13111200	Strong transcription	Fetal Muscle Leg	muscle
10	chr18:13095400-13109600	Strong transcription	H1 Cell Line	embryonic stem cell
11	chr18:13097200-13118800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr18:13097600-13111600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr18:13098400-13109400	Strong transcription	Sigmoid Colon	Sigmoid Colon
14	chr18:13098800-13121200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr18:13099000-13109600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr18:13099200-13108600	Strong transcription	Primary hematopoietic stem cells	blood
17	chr18:13099200-13109200	Strong transcription	Primary B cells from peripheral blood	blood
18	chr18:13099200-13109200	Strong transcription	Brain Anterior Caudate	brain
19	chr18:13099200-13109200	Strong transcription	Skeletal Muscle Female	skeletal muscle
20	chr18:13099200-13109200	Strong transcription	A549	lung
21	chr18:13099200-13109400	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr18:13099200-13109600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr18:13099200-13109600	Strong transcription	Primary B cells from cord blood	blood
24	chr18:13099200-13109600	Strong transcription	Placenta	Placenta
25	chr18:13099200-13109600	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr18:13099200-13124800	Strong transcription	Fetal Thymus	thymus
27	chr18:13099200-13127800	Strong transcription	Dnd41	blood
28	chr18:13099200-13128200	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr18:13099400-13108600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
30	chr18:13099400-13109000	Strong transcription	Rectal Smooth Muscle	rectum
31	chr18:13099400-13109400	Strong transcription	Duodenum Smooth Muscle	Duodenum
32	chr18:13099400-13109600	Strong transcription	Adipose Nuclei	Adipose
33	chr18:13099400-13109600	Strong transcription	Osteobl	bone
34	chr18:13099400-13109800	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr18:13099400-13110000	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr18:13099400-13111400	Strong transcription	Fetal Intestine Large	intestine
37	chr18:13099400-13129400	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr18:13099600-13108800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr18:13099600-13109200	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr18:13099600-13109200	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr18:13099600-13109400	Strong transcription	Duodenum Mucosa	Duodenum
42	chr18:13099600-13109600	Strong transcription	Liver	Liver
43	chr18:13099600-13109600	Strong transcription	GM12878-XiMat	blood
44	chr18:13099600-13109800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr18:13099800-13109200	Strong transcription	Primary T cells from cord blood	blood
46	chr18:13099800-13109400	Strong transcription	Fetal Lung	lung
47	chr18:13099800-13111000	Strong transcription	Cortex derived primary cultured neurospheres	brain
48	chr18:13099800-13111000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr18:13099800-13111600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr18:13099800-13112000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links