Variant report

Variant	rs7236172
Chromosome Location	chr18:13141910-13141911
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:13139722..13141913-chr18:13426612..13428353,2	MCF-7	breast:
2	chr18:13141699..13142727-chr18:13159347..13160164,3	MCF-7	breast:
3	chr18:13140854..13145257-chr18:13540228..13543130,4	MCF-7	breast:
4	chr18:13139784..13142937-chr18:13215706..13218370,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000267239	Chromatin interaction
ENSG00000267690	Chromatin interaction
ENSG00000168675	Chromatin interaction

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs11080624	0.98[EUR][1000 genomes]
rs11080626	0.96[EUR][1000 genomes]
rs11080627	0.99[EUR][1000 genomes]
rs11659468	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11660869	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11660908	0.94[EUR][1000 genomes]
rs11661163	0.83[ASN][1000 genomes]
rs11661802	0.99[EUR][1000 genomes]
rs11662528	0.99[EUR][1000 genomes]
rs11663369	0.99[EUR][1000 genomes]
rs11663399	0.99[EUR][1000 genomes]
rs11663455	0.99[EUR][1000 genomes]
rs11663521	0.96[EUR][1000 genomes]
rs11664958	0.94[EUR][1000 genomes]
rs11665378	0.96[EUR][1000 genomes]
rs11665394	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11665451	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12604624	0.95[EUR][1000 genomes]
rs12606033	0.95[EUR][1000 genomes]
rs12607152	0.99[EUR][1000 genomes]
rs12607203	0.99[EUR][1000 genomes]
rs12607323	0.95[EUR][1000 genomes]
rs12607329	0.95[EUR][1000 genomes]
rs12607661	0.99[EUR][1000 genomes]
rs12607682	0.96[EUR][1000 genomes]
rs16940154	0.80[AFR][1000 genomes]
rs2282542	0.96[EUR][1000 genomes]
rs3786162	0.99[EUR][1000 genomes]
rs3786163	0.99[EUR][1000 genomes]
rs3786164	0.99[EUR][1000 genomes]
rs3809907	0.96[EUR][1000 genomes]
rs3809908	0.96[EUR][1000 genomes]
rs56913743	0.99[EUR][1000 genomes]
rs57292913	0.95[EUR][1000 genomes]
rs57448401	0.98[EUR][1000 genomes]
rs57906042	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58158805	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58554306	0.95[EUR][1000 genomes]
rs58558999	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58820551	0.95[EUR][1000 genomes]
rs58933784	0.94[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs59557962	0.96[EUR][1000 genomes]
rs59962936	0.95[EUR][1000 genomes]
rs60015020	0.96[EUR][1000 genomes]
rs60281669	0.96[EUR][1000 genomes]
rs60669993	0.96[EUR][1000 genomes]
rs60685477	0.96[EUR][1000 genomes]
rs60827697	0.95[EUR][1000 genomes]
rs61364693	0.94[EUR][1000 genomes]
rs66470739	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66494849	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6650609	0.96[EUR][1000 genomes]
rs6650617	0.96[EUR][1000 genomes]
rs66559751	0.96[EUR][1000 genomes]
rs66685204	0.95[EUR][1000 genomes]
rs66688868	0.99[EUR][1000 genomes]
rs66767699	0.92[ASN][1000 genomes]
rs66935882	0.93[EUR][1000 genomes]
rs67084247	0.95[EUR][1000 genomes]
rs67334724	0.95[EUR][1000 genomes]
rs67357574	0.99[EUR][1000 genomes]
rs67432911	0.99[EUR][1000 genomes]
rs67675517	0.99[EUR][1000 genomes]
rs67765196	0.96[EUR][1000 genomes]
rs67863818	0.98[EUR][1000 genomes]
rs67868710	0.96[EUR][1000 genomes]
rs67955156	0.94[EUR][1000 genomes]
rs67996007	0.81[ASN][1000 genomes]
rs68169869	0.95[EUR][1000 genomes]
rs7228940	0.96[EUR][1000 genomes]
rs7236987	0.96[EUR][1000 genomes]
rs7243276	0.96[EUR][1000 genomes]
rs7243536	0.96[EUR][1000 genomes]
rs7243597	0.96[EUR][1000 genomes]
rs72636760	0.95[EUR][1000 genomes]
rs72636761	0.95[EUR][1000 genomes]
rs8084728	0.99[EUR][1000 genomes]
rs8088543	0.96[EUR][1000 genomes]
rs8090759	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8091992	0.96[EUR][1000 genomes]
rs8092992	0.95[EUR][1000 genomes]
rs8093363	0.96[EUR][1000 genomes]
rs8093650	0.93[EUR][1000 genomes]
rs8094351	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062014	chr18:12687210-13183383	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	nsv543655	chr18:12687210-13183383	Flanking Bivalent TSS/Enh Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
3	nsv1057083	chr18:12916779-13207538	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv576524	chr18:12918318-13183609	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv1056593	chr18:12926314-13183383	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	nsv1064364	chr18:12926314-13207686	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
7	nsv833591	chr18:13093777-13253748	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
8	nsv515878	chr18:13122618-13142415	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv909408	chr18:13122618-13308950	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv960622	chr18:13141328-13142837	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	esv3437323	chr18:13141552-13145850	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13136400-13145800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr18:13138000-13142800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr18:13138000-13144200	Weak transcription	Pancreas	Pancrea
4	chr18:13138000-13144200	Weak transcription	Psoas Muscle	Psoas
5	chr18:13138800-13143200	Weak transcription	Adipose Nuclei	Adipose
6	chr18:13138800-13143800	Weak transcription	Spleen	Spleen
7	chr18:13138800-13144200	Weak transcription	Thymus	Thymus
8	chr18:13141400-13143200	Enhancers	HepG2	liver

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