Variant report

Variant	rs11667024
Chromosome Location	chr19:40005228-40005229
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr19:40003820-40007253	PANC-1	pancreas:	n/a	chr19:40006697-40006706
2	ZNF263	chr19:40005149-40005727	HEK293-T-REx	kidney:	n/a	n/a
3	SIN3AK20	chr19:40002596-40007321	PANC-1	pancreas:	n/a	n/a
4	POLR2A	chr19:40005227-40005514	H1-neurons	neurons:	n/a	n/a
5	BCL3	chr19:40005105-40006369	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:39935872..39937858-chr19:40003816..40005942,2	MCF-7	breast:
2	chr19:39926370..39927938-chr19:40004340..40006529,2	K562	blood:

Variant related genes	Relation type
ENSG00000186838	TF binding region
ENSG00000105193	Chromatin interaction
ENSG00000196235	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911689	chr19:39903088-40021759	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv911690	chr19:39903088-40046863	Weak transcription Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	nsv911691	chr19:39979966-40029386	Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv911692	chr19:39979966-40046863	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv1060251	chr19:39982988-40099773	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
6	nsv911693	chr19:39986241-40033574	Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	esv3374976	chr19:39998161-40023263	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv522811	chr19:40004640-40008220	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv579509	chr19:40004640-40133438	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39998400-40005400	Weak transcription	Right Atrium	heart
2	chr19:40004600-40005400	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
3	chr19:40004800-40005400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr19:40005200-40005400	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr19:40005200-40005400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr19:40005200-40005400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr19:40005200-40005400	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
8	chr19:40005200-40005400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
9	chr19:40005200-40005400	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr19:40005200-40005400	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
11	chr19:40005200-40005600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
12	chr19:40005200-40005600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
13	chr19:40005200-40005600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
14	chr19:40005200-40005600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr19:40005200-40005600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
16	chr19:40005200-40005600	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
17	chr19:40005200-40005600	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
18	chr19:40005200-40005600	Bivalent Enhancer	Brain Hippocampus Middle	brain
19	chr19:40005200-40005600	Bivalent Enhancer	Fetal Brain Female	brain
20	chr19:40005200-40005600	Bivalent Enhancer	Fetal Stomach	stomach
21	chr19:40005200-40005800	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
22	chr19:40005200-40006000	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
23	chr19:40005200-40006600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
24	chr19:40005200-40007200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
25	chr19:40005200-40007400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
26	chr19:40005200-40007800	Active TSS	H9 Cell Line	embryonic stem cell

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