Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:38152810..38154502-chr19:38164409..38165992,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1060522	0.87[EUR][1000 genomes]
rs10853710	0.90[EUR][1000 genomes]
rs11083429	0.82[EUR][1000 genomes]
rs11083433	0.87[EUR][1000 genomes]
rs11666172	0.90[EUR][1000 genomes]
rs11671953	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11673497	1.00[EUR][1000 genomes]
rs16975299	0.87[EUR][1000 genomes]
rs17246792	0.98[EUR][1000 genomes]
rs28431170	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2891657	0.87[EUR][1000 genomes]
rs34991303	0.91[EUR][1000 genomes]
rs55871826	0.99[EUR][1000 genomes]
rs55913702	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55950325	0.87[EUR][1000 genomes]
rs62108305	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62108351	0.87[EUR][1000 genomes]
rs6508739	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7249622	0.91[EUR][1000 genomes]
rs7253081	0.91[EUR][1000 genomes]
rs7258385	0.98[EUR][1000 genomes]
rs73037060	0.96[EUR][1000 genomes]
rs8102818	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11668796	AC012309.5	cis	Thyroid	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38152000-38169000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr19:38165000-38167600	Weak transcription	Brain Angular Gyrus	brain
3	chr19:38165000-38167600	Weak transcription	Ovary	ovary
4	chr19:38165200-38167000	Weak transcription	Primary T helper cells fromperipheralblood	blood

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