Variant report

Variant	rs8102818
Chromosome Location	chr19:38114251-38114252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11083429	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11668796	0.82[EUR][1000 genomes]
rs11671953	0.81[EUR][1000 genomes]
rs11673497	0.82[EUR][1000 genomes]
rs17246792	0.80[EUR][1000 genomes]
rs28431170	0.82[EUR][1000 genomes]
rs55871826	0.81[EUR][1000 genomes]
rs55913702	0.82[EUR][1000 genomes]
rs56374286	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62108305	0.80[EUR][1000 genomes]
rs6508739	0.82[EUR][1000 genomes]
rs7258385	0.81[EUR][1000 genomes]
rs73037060	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs8102818	ZNF781	cis	Esophagus Muscularis	GTEx
rs8102818	AC012309.5	cis	Artery Tibial	GTEx
rs8102818	AC012309.5	cis	Heart Left Ventricle	GTEx
rs8102818	ZNF585A	Cis_1M	lymphoblastoid	RTeQTL
rs8102818	AC012309.5	cis	Thyroid	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38105000-38116000	Weak transcription	Right Ventricle	heart
2	chr19:38105200-38115000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr19:38112600-38115400	ZNF genes & repeats	Adipose Nuclei	Adipose
4	chr19:38113600-38114800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr19:38113600-38114800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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