Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11083427	1.00[CHB][hapmap]
rs11083428	1.00[CHB][hapmap];0.94[CHD][hapmap]
rs11083430	1.00[CHB][hapmap]
rs11083433	0.92[CEU][hapmap];0.81[GIH][hapmap]
rs1128327	1.00[CHB][hapmap]
rs11666662	1.00[CHB][hapmap];0.94[CHD][hapmap]
rs11668796	0.82[EUR][1000 genomes]
rs11671953	0.81[EUR][1000 genomes]
rs11673497	0.82[EUR][1000 genomes]
rs12162238	1.00[CHB][hapmap]
rs12459013	1.00[CHB][hapmap];0.94[CHD][hapmap]
rs12462271	1.00[CHB][hapmap]
rs16975299	0.92[CEU][hapmap];0.81[GIH][hapmap];0.80[TSI][hapmap]
rs17246792	0.92[CEU][hapmap];0.83[GIH][hapmap];0.82[TSI][hapmap];0.80[EUR][1000 genomes]
rs17303301	1.00[CHB][hapmap]
rs2279150	0.90[CHB][hapmap]
rs241955	1.00[CHB][hapmap]
rs28431170	0.82[EUR][1000 genomes]
rs35205379	1.00[CHB][hapmap];0.94[CHD][hapmap]
rs55871826	0.81[EUR][1000 genomes]
rs55913702	0.82[EUR][1000 genomes]
rs56374286	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62108305	0.80[EUR][1000 genomes]
rs6508739	0.82[EUR][1000 genomes]
rs7248397	1.00[CHB][hapmap]
rs7249622	0.92[CEU][hapmap];0.80[TSI][hapmap]
rs7253081	0.92[CEU][hapmap];0.80[TSI][hapmap]
rs7258385	0.81[EUR][1000 genomes]
rs73037060	0.81[EUR][1000 genomes]
rs8102818	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs11083429	AC012309.5	cis	Heart Left Ventricle	GTEx
rs11083429	AC012309.5	cis	Thyroid	GTEx
rs11083429	AC012309.5	cis	Artery Tibial	GTEx
rs11083429	ZNF573	cis	multi-tissue	Pritchard

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38105000-38112600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr19:38105000-38116000	Weak transcription	Right Ventricle	heart
3	chr19:38105200-38115000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr19:38105400-38108000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr19:38106200-38107800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
6	chr19:38106600-38109000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr19:38107000-38108000	Weak transcription	Brain Hippocampus Middle	brain
8	chr19:38107200-38108800	Weak transcription	Adipose Nuclei	Adipose

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