Variant report

Variant	rs116701421
Chromosome Location	chr4:98417676-98417677
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:98417634..98419230-chr4:98419373..98421465,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879640	chr4:97711707-98697586	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830014	chr4:98220259-98419635	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv879641	chr4:98317295-98506794	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv879642	chr4:98317295-98569259	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879643	chr4:98317295-99065480	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	esv1835978	chr4:98330337-98469951	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv1833751	chr4:98330337-98471647	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv1841838	chr4:98333918-98443617	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv594921	chr4:98333918-98469951	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv879644	chr4:98333918-98506794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv830016	chr4:98360907-98550751	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv879645	chr4:98371858-98497853	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv879646	chr4:98386631-98569259	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv868914	chr4:98416047-98969285	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:98414200-98420600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr4:98414600-98420400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:98415200-98419000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr4:98415400-98419400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:98415800-98420400	Weak transcription	NHEK	skin
6	chr4:98416000-98420400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr4:98417000-98418000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr4:98417000-98420600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr4:98417200-98417800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:98417200-98418000	Active TSS	A549	lung
11	chr4:98417200-98419200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr4:98417400-98417800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr4:98417400-98417800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:98417400-98417800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr4:98417400-98418000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr4:98417400-98418000	Enhancers	HMEC	breast
17	chr4:98417400-98418200	Enhancers	NH-A	brain
18	chr4:98417400-98418400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr4:98417400-98420600	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr4:98417600-98417800	Enhancers	H9 Cell Line	embryonic stem cell
21	chr4:98417600-98418000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr4:98417600-98418000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:98417600-98418000	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr4:98417600-98418000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr4:98417600-98418000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr4:98417600-98418000	Flanking Active TSS	Liver	Liver
27	chr4:98417600-98418200	Enhancers	H1 Cell Line	embryonic stem cell
28	chr4:98417600-98418200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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