The 2.0 version of rSNPBase

Variant report

Variant rs11671972
Chromosome Location chr19:37863626-37863627
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:100 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:37862200-37867200 ZNF genes & repeats A549 lung
2 chr19:37862600-37864400 Weak transcription Fetal Muscle Trunk muscle
3 chr19:37862600-37864400 Weak transcription Small Intestine intestine
4 chr19:37862600-37864600 Weak transcription Aorta Aorta
5 chr19:37862600-37864600 Weak transcription Left Ventricle heart
6 chr19:37862600-37864600 Weak transcription Ovary ovary
7 chr19:37862600-37864600 Weak transcription Sigmoid Colon Sigmoid Colon
8 chr19:37862600-37864800 Weak transcription Colonic Mucosa Colon
9 chr19:37862600-37865000 Weak transcription Placenta Placenta
10 chr19:37862600-37865800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
11 chr19:37862600-37865800 Weak transcription Esophagus oesophagus
12 chr19:37862600-37865800 Weak transcription Placenta Amnion Placenta Amnion
13 chr19:37862600-37866600 Weak transcription Gastric stomach
14 chr19:37862600-37866600 Weak transcription Stomach Mucosa stomach
15 chr19:37862600-37871000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr19:37862800-37863800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
17 chr19:37862800-37863800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
18 chr19:37862800-37863800 Weak transcription Rectal Mucosa Donor 31 rectum
19 chr19:37862800-37863800 Enhancers Right Ventricle heart
20 chr19:37862800-37863800 Active TSS Skeletal Muscle Male skeletal muscle
21 chr19:37862800-37863800 Weak transcription GM12878-XiMat blood
22 chr19:37862800-37864000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
23 chr19:37862800-37864000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
24 chr19:37862800-37864000 Weak transcription Primary B cells from cord blood blood
25 chr19:37862800-37864000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
26 chr19:37862800-37864000 Weak transcription Adipose Nuclei Adipose
27 chr19:37862800-37864000 Weak transcription Liver Liver
28 chr19:37862800-37864000 Weak transcription Duodenum Smooth Muscle Duodenum
29 chr19:37862800-37864000 Weak transcription HSMM muscle
30 chr19:37862800-37864400 Weak transcription Breast Myoepithelial Primary Cells Breast
31 chr19:37862800-37864400 Weak transcription Primary hematopoietic stem cells short term culture blood
32 chr19:37862800-37864400 Weak transcription Fetal Adrenal Gland Adrenal Gland
33 chr19:37862800-37864600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
34 chr19:37862800-37864600 Weak transcription Primary hematopoietic stem cells blood
35 chr19:37862800-37864600 Weak transcription Muscle Satellite Cultured Cells --
36 chr19:37862800-37864600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
37 chr19:37862800-37864600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr19:37862800-37864600 Weak transcription Brain Germinal Matrix brain
39 chr19:37862800-37864600 Weak transcription Duodenum Mucosa Duodenum
40 chr19:37862800-37864600 Weak transcription Fetal Muscle Leg muscle
41 chr19:37862800-37864600 Weak transcription Fetal Thymus thymus
42 chr19:37862800-37864600 Weak transcription Pancreas Pancrea
43 chr19:37862800-37864600 Weak transcription NH-A brain
44 chr19:37862800-37864800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
45 chr19:37862800-37864800 Weak transcription Fetal Lung lung
46 chr19:37862800-37865000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
47 chr19:37862800-37865000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
48 chr19:37862800-37865000 Weak transcription Colon Smooth Muscle Colon
49 chr19:37862800-37865000 Weak transcription Fetal Intestine Large intestine
50 chr19:37862800-37865000 Weak transcription Pancreatic Islets Pancreatic Islet

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Last update: Aug 31, 2015