Variant report

Variant	rs2045908
Chromosome Location	chr19:37979768-37979769
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:37978934..37980953-chr19:37987940..37990198,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000266916	Chromatin interaction

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1015848	0.93[EUR][1000 genomes]
rs1015849	0.93[EUR][1000 genomes]
rs1035479	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10403582	0.91[EUR][1000 genomes]
rs10404920	0.81[EUR][1000 genomes]
rs10404945	0.90[EUR][1000 genomes]
rs10405064	0.81[EUR][1000 genomes]
rs10405325	0.84[EUR][1000 genomes]
rs10406177	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10407084	0.89[EUR][1000 genomes]
rs10409204	0.91[EUR][1000 genomes]
rs10411574	0.93[EUR][1000 genomes]
rs10413602	0.86[EUR][1000 genomes]
rs10420430	0.86[EUR][1000 genomes]
rs10420722	0.96[EUR][1000 genomes]
rs10420754	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10422074	0.86[EUR][1000 genomes]
rs10422667	0.93[EUR][1000 genomes]
rs10426618	0.93[EUR][1000 genomes]
rs11083426	0.88[EUR][1000 genomes]
rs11671972	0.83[ASN][1000 genomes]
rs12972252	0.93[EUR][1000 genomes]
rs12979470	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12981532	0.86[EUR][1000 genomes]
rs13343471	0.91[EUR][1000 genomes]
rs13343502	0.95[EUR][1000 genomes]
rs1382357	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1559229	0.84[ASN][1000 genomes]
rs2081096	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2112920	0.83[EUR][1000 genomes]
rs2112922	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2112923	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2126977	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2279148	0.87[EUR][1000 genomes]
rs2279149	0.87[EUR][1000 genomes]
rs2291004	0.92[EUR][1000 genomes]
rs2303131	0.91[EUR][1000 genomes]
rs28373708	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28538699	0.95[EUR][1000 genomes]
rs28605784	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28623164	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2891699	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35540940	0.92[EUR][1000 genomes]
rs35777021	0.91[EUR][1000 genomes]
rs3760825	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3803895	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4452075	0.83[ASN][1000 genomes]
rs4801759	0.93[EUR][1000 genomes]
rs4801803	0.95[EUR][1000 genomes]
rs4802766	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4802889	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4803195	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4803229	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4803460	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4803539	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59224125	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6508719	0.84[ASN][1000 genomes]
rs6508732	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6508733	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs713256	0.82[EUR][1000 genomes]
rs7246993	0.86[EUR][1000 genomes]
rs7248733	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7252099	0.91[EUR][1000 genomes]
rs7252325	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7252346	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7253091	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7253114	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7255407	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7255785	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7255952	0.82[AFR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7255972	0.91[EUR][1000 genomes]
rs7255996	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7256130	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73631095	0.95[EUR][1000 genomes]
rs8106839	0.96[EUR][1000 genomes]
rs8109038	0.89[EUR][1000 genomes]
rs8109632	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8111782	0.81[EUR][1000 genomes]
rs8112610	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9676739	0.95[EUR][1000 genomes]
rs9676967	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1057688	chr19:37828019-37988253	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv833819	chr19:37899501-38051599	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1056753	chr19:37963714-38015943	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37961400-37980400	ZNF genes & repeats	Liver	Liver
2	chr19:37963200-37981000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr19:37963800-37985600	ZNF genes & repeats	Adipose Nuclei	Adipose
4	chr19:37966200-37984000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr19:37971600-37980600	ZNF genes & repeats	Duodenum Mucosa	Duodenum

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