Variant report

Variant	rs8106839
Chromosome Location	chr19:37958475-37958476
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:386)
CpG islands
(count:183)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:386 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIX5	chr19:37957997-37958616	H1-hESC	embryonic stem cell:	n/a	chr19:37958352-37958361 chr19:37958350-37958364 chr19:37958354-37958363
2	CREB1	chr19:37958168-37958595	A549	lung:	n/a	n/a
3	RCOR1	chr19:37957733-37958634	K562	blood:	n/a	n/a
4	JUND	chr19:37958312-37958645	HepG2	liver:	n/a	n/a
5	SP1	chr19:37957555-37958817	A549	lung:	n/a	chr19:37957835-37957845 chr19:37957874-37957886 chr19:37957835-37957845 chr19:37957875-37957884 chr19:37957925-37957935 chr19:37957923-37957937
6	MTA3	chr19:37958187-37958619	GM12878	blood:	n/a	n/a
7	GABPA	chr19:37957978-37958644	HepG2	liver:	n/a	n/a
8	SIN3AK20	chr19:37957438-37958839	PANC-1	pancreas:	n/a	n/a
9	MAX	chr19:37958278-37958529	K562	blood:	n/a	n/a
10	YY1	chr19:37957596-37958608	GM12878	blood:	n/a	n/a
11	POLR2A	chr19:37957567-37958660	GM19099	blood:	n/a	n/a
12	CEBPD	chr19:37958272-37958584	HepG2	liver:	n/a	n/a
13	GABPA	chr19:37957987-37958631	HepG2	liver:	n/a	n/a
14	STAT5A	chr19:37958204-37958689	GM12878	blood:	n/a	chr19:37958343-37958367 chr19:37958344-37958367
15	TAF1	chr19:37958130-37958609	PFSK-1	brain:	n/a	n/a
16	SP1	chr19:37958114-37958641	GM12878	blood:	n/a	n/a
17	EP300	chr19:37958323-37958523	K562	blood:	n/a	chr19:37958410-37958419
18	YY1	chr19:37958197-37958604	ECC-1	luminal epithelium:	n/a	n/a
19	POLR2A	chr19:37957547-37958553	GM12892	blood:	n/a	n/a
20	YY1	chr19:37958282-37958533	ECC-1	luminal epithelium:	n/a	n/a
21	CUX1	chr19:37958262-37958554	K562	blood:	n/a	n/a
22	MBD4	chr19:37958184-37958671	HepG2	liver:	n/a	n/a
23	POLR2A	chr19:37957727-37958557	H1-hESC	embryonic stem cell:	n/a	n/a
24	SRF	chr19:37958139-37958669	MCF-7	breast:	n/a	n/a
25	BCL3	chr19:37957722-37958621	A549	lung:	n/a	n/a
26	CHD2	chr19:37957561-37958657	GM12878	blood:	n/a	n/a
27	SPI1	chr19:37958187-37958620	GM12878	blood:	n/a	chr19:37958597-37958610
28	MYC	chr19:37958248-37958542	HUVEC	blood vessel:	n/a	n/a
29	IRF4	chr19:37958137-37958644	GM12878	blood:	n/a	n/a
30	POU2F2	chr19:37958059-37958654	GM12891	blood:	n/a	chr19:37958386-37958398
31	USF1	chr19:37958205-37958591	A549	lung:	n/a	n/a
32	SPI1	chr19:37958262-37958560	K562	blood:	n/a	n/a
33	TAF1	chr19:37958182-37958647	H1-hESC	embryonic stem cell:	n/a	n/a
34	ELF1	chr19:37958103-37958711	A549	lung:	n/a	chr19:37958408-37958421
35	SIN3AK20	chr19:37957611-37958658	PANC-1	pancreas:	n/a	n/a
36	E2F4	chr19:37958000-37958559	MCF10A-Er-Src	breast:	n/a	n/a
37	GABPA	chr19:37957678-37958817	SK-N-SH	brain:	n/a	n/a
38	MAFK	chr19:37958185-37958560	K562	blood:	n/a	n/a
39	FOSL2	chr19:37958068-37958779	A549	lung:	n/a	n/a
40	MAFF	chr19:37958410-37958588	K562	blood:	n/a	n/a
41	POLR2A	chr19:37957536-37958662	PBDE	blood:	n/a	n/a
42	POU2F2	chr19:37957541-37958712	GM12878	blood:	n/a	chr19:37958386-37958398
43	PML	chr19:37958075-37958692	GM12878	blood:	n/a	n/a
44	RFX5	chr19:37957706-37958858	HepG2	liver:	n/a	n/a
45	SMC3	chr19:37958312-37958497	K562	blood:	n/a	n/a
46	ETS1	chr19:37957536-37958807	A549	lung:	n/a	chr19:37957920-37957933 chr19:37958351-37958364 chr19:37958350-37958363
47	TCF7L2	chr19:37957540-37958593	HEK293	kidney:	n/a	chr19:37957709-37957725 chr19:37957709-37957725 chr19:37957710-37957724
48	MAX	chr19:37957464-37958671	K562	blood:	n/a	n/a
49	MYC	chr19:37958179-37958554	HepG2	liver:	n/a	n/a
50	TBP	chr19:37957661-37958598	K562	blood:	n/a	n/a

(count:183 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:37958453-37958503	RPTEC	kidney:	n/a
2	chr19:37958444-37958494	RPTEC	kidney:	n/a
3	chr19:37958453-37958503	HUVEC	blood vessel:	n/a
4	chr19:37958466-37958516	SKMC	muscle:	n/a
5	chr19:37958444-37958494	CMK	blood:	n/a
6	chr19:37958453-37958503	HAEpiC	amniotic membrane:	n/a
7	chr19:37958453-37958503	MCF-7	breast:	n/a
8	chr19:37958453-37958503	AG04449	skin:	fetal
9	chr19:37958444-37958494	HEK293	kidney:	embryo
10	chr19:37958466-37958516	SK-N-MC	brain:	n/a
11	chr19:37958444-37958494	SAEC	small airway:	n/a
12	chr19:37958444-37958494	GM06990	blood:	n/a
13	chr19:37958466-37958516	HRPEpiC	eye:	n/a
14	chr19:37958444-37958494	HepG2	liver:	n/a
15	chr19:37958453-37958503	AG09309	skin:	n/a
16	chr19:37958444-37958494	HRE	kidney:	n/a
17	chr19:37958444-37958494	K562	blood:	n/a
18	chr19:37958466-37958516	MCF10A-Er-Src	breast:	n/a
19	chr19:37958444-37958494	SK-N-MC	brain:	n/a
20	chr19:37958444-37958494	HRCEpiC	kidney:	n/a
21	chr19:37958453-37958503	AG10803	skin:	n/a
22	chr19:37958453-37958503	HEEpiC	esophagus:	n/a
23	chr19:37958444-37958494	SK-N-SH	brain:	n/a
24	chr19:37958444-37958494	NH-A	brain:	n/a
25	chr19:37958466-37958516	HEEpiC	esophagus:	n/a
26	chr19:37958453-37958503	MCF10A-Er-Src	breast:	n/a
27	chr19:37958453-37958503	GM06990	blood:	n/a
28	chr19:37958444-37958494	HIPEpiC	eye:	n/a
29	chr19:37958466-37958516	AG10803	skin:	n/a
30	chr19:37958466-37958516	T-47D	breast:	n/a
31	chr19:37958466-37958516	GM06990	blood:	n/a
32	chr19:37958444-37958494	Jurkat	blood:	n/a
33	chr19:37958466-37958516	Hela-S3	cervix:	n/a
34	chr19:37958444-37958494	AG04450	lung:	fetal
35	chr19:37958453-37958503	CMK	blood:	n/a
36	chr19:37958466-37958516	PrEC	prostate:	n/a
37	chr19:37958444-37958494	U87	brain:	n/a
38	chr19:37958466-37958516	Jurkat	blood:	n/a
39	chr19:37958466-37958516	HepG2	liver:	n/a
40	chr19:37958444-37958494	HCPEpiC	choroid plexus:	n/a
41	chr19:37958444-37958494	LNCaP	prostate:	n/a
42	chr19:37958466-37958516	HUVEC	blood vessel:	n/a
43	chr19:37958444-37958494	Hepatocyte	liver:	n/a
44	chr19:37958444-37958494	Hela-S3	cervix:	n/a
45	chr19:37958453-37958503	A549	lung:	n/a
46	chr19:37958453-37958503	GM12891	blood:	n/a
47	chr19:37958466-37958516	GM12878	blood:	n/a
48	chr19:37958466-37958516	GM12892	blood:	n/a
49	chr19:37958444-37958494	HAEpiC	amniotic membrane:	n/a
50	chr19:37958444-37958494	ovcar-3	ovarian:	n/a

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:37957751..37961901-chr19:37996099..37999727,6	MCF-7	breast:
2	chr19:37957663..37960695-chr19:38143642..38147199,3	MCF-7	breast:
3	chr19:37956743..37958791-chr19:38268721..38270290,2	K562	blood:
4	chr19:37955552..37960531-chr19:37996583..37998774,4	MCF-7	breast:
5	chr19:37945213..37949636-chr19:37955245..37960324,5	K562	blood:

No data

Variant related genes	Relation type
ZNF570	TF binding region
ZNF569	TF binding region
ZNF569	CpG island
ZNF570	CpG island
ENSG00000266916	Chromatin interaction
ENSG00000120784	Chromatin interaction
ENSG00000196437	Chromatin interaction
ENSG00000188227	Chromatin interaction
ENSG00000189144	Chromatin interaction

Extended variants
information (count: 119 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs1015848	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1015849	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1035479	0.91[EUR][1000 genomes]
rs10403582	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10403613	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10404920	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10404945	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs10405064	1.00[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10405325	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10405407	0.88[ASW][hapmap];1.00[CEU][hapmap];0.91[GIH][hapmap];0.84[JPT][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs10406177	0.88[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.94[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs10407084	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10409204	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10411574	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10412043	0.81[EUR][1000 genomes]
rs10413602	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10414904	1.00[CEU][hapmap];0.84[JPT][hapmap];0.82[EUR][1000 genomes]
rs10415024	1.00[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap]
rs10415937	1.00[CEU][hapmap];0.84[JPT][hapmap];0.82[EUR][1000 genomes]
rs10417503	1.00[CEU][hapmap];0.81[CHB][hapmap];0.96[CHD][hapmap];0.82[GIH][hapmap];0.89[JPT][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs10417844	0.88[ASW][hapmap];0.93[CEU][hapmap];0.91[GIH][hapmap];0.80[JPT][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs10420430	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10420722	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10420754	1.00[CEU][hapmap];0.94[JPT][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10422074	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10422423	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10422667	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10422967	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10424574	1.00[CEU][hapmap];0.81[CHB][hapmap];0.96[CHD][hapmap];0.82[GIH][hapmap];0.89[JPT][hapmap];0.90[TSI][hapmap]
rs10426618	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11083426	0.86[EUR][1000 genomes]
rs12104380	0.81[EUR][1000 genomes]
rs12709813	0.82[EUR][1000 genomes]
rs12972252	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12979470	0.96[EUR][1000 genomes]
rs12981532	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13343471	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13343485	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13343502	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13345116	1.00[CEU][hapmap];0.84[JPT][hapmap];0.82[EUR][1000 genomes]
rs1373991	0.88[ASW][hapmap];1.00[CEU][hapmap];0.91[GIH][hapmap];0.84[JPT][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs1382357	1.00[CEU][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.96[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs1559229	1.00[CEU][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs1823061	0.85[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap]
rs2045908	0.96[EUR][1000 genomes]
rs2081096	1.00[CEU][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.89[LWK][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2112920	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2112922	0.95[EUR][1000 genomes]
rs2112923	0.88[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.96[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2126977	0.88[ASW][hapmap];0.93[CEU][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs2279148	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs2279149	0.93[CEU][hapmap];0.82[GIH][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs2291004	0.93[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2303131	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28373708	0.96[EUR][1000 genomes]
rs28402338	0.81[EUR][1000 genomes]
rs28538699	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28605784	0.94[EUR][1000 genomes]
rs28623164	0.96[EUR][1000 genomes]
rs2891699	0.88[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.96[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs35085437	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35540940	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35777021	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3745765	0.88[ASW][hapmap];1.00[CEU][hapmap];0.91[GIH][hapmap];0.84[JPT][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs3760825	0.88[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.96[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3803895	0.91[EUR][1000 genomes]
rs4417644	1.00[CEU][hapmap];0.96[CHD][hapmap];0.82[GIH][hapmap];0.89[JPT][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4452075	0.88[ASW][hapmap];1.00[CEU][hapmap];0.91[GIH][hapmap];0.94[JPT][hapmap];0.83[LWK][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs4801759	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4801803	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4802766	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4802889	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4803195	0.84[EUR][1000 genomes]
rs4803210	0.82[CEU][hapmap]
rs4803229	0.88[ASW][hapmap];1.00[CEU][hapmap];0.91[GIH][hapmap];0.94[JPT][hapmap];0.84[LWK][hapmap];0.91[MKK][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs4803347	0.82[EUR][1000 genomes]
rs4803460	0.91[EUR][1000 genomes]
rs4803539	0.91[EUR][1000 genomes]
rs4969487	0.81[EUR][1000 genomes]
rs59224125	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62110394	0.82[EUR][1000 genomes]
rs6508711	0.82[EUR][1000 genomes]
rs6508719	1.00[CEU][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs6508732	0.88[ASW][hapmap];0.93[CEU][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes]
rs6508733	0.93[CEU][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes]
rs713256	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7246993	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7247259	1.00[CEU][hapmap];0.84[JPT][hapmap];0.82[EUR][1000 genomes]
rs7248733	0.88[ASW][hapmap];0.93[CEU][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.80[MKK][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]
rs7252099	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7252325	0.94[AFR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7252346	0.88[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.96[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs7253091	1.00[CEU][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.93[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7253114	0.88[ASW][hapmap];0.93[CEU][hapmap];0.98[GIH][hapmap];0.80[JPT][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs7255140	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7255407	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7255785	0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7255952	0.93[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7255972	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7255996	0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7256130	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7257672	1.00[CEU][hapmap];0.80[JPT][hapmap]
rs7258692	0.83[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.84[JPT][hapmap];0.90[TSI][hapmap]
rs7259968	0.82[EUR][1000 genomes]
rs73631095	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7408563	1.00[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap]
rs8109038	0.93[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8109632	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8111782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8112610	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9304566	1.00[CEU][hapmap];0.81[CHB][hapmap];0.96[CHD][hapmap];0.82[GIH][hapmap];0.89[JPT][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9676739	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9676967	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9917081	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1057688	chr19:37828019-37988253	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv833819	chr19:37899501-38051599	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs8106839	FAM98C	cis	cerebellum	SCAN
rs8106839	LIPE	cis	cerebellum	SCAN
rs8106839	EXOSC5	cis	cerebellum	SCAN
rs8106839	MEGF8	cis	cerebellum	SCAN
rs8106839	BLVRB	cis	cerebellum	SCAN
rs8106839	CBLC	cis	parietal	SCAN
rs8106839	DMPK	cis	parietal	SCAN
rs8106839	PLEKHG2	cis	cerebellum	SCAN
rs8106839	PAFAH1B3	cis	cerebellum	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37956600-37958800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr19:37956800-37958600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr19:37956800-37958600	Active TSS	GM12878-XiMat	blood
4	chr19:37956800-37960800	Active TSS	Duodenum Smooth Muscle	Duodenum
5	chr19:37956800-37961200	Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr19:37956800-37961200	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr19:37956800-37961400	Active TSS	HUES64 Cell Line	embryonic stem cell
8	chr19:37956800-37961400	Active TSS	NHLF	lung
9	chr19:37956800-37961600	Active TSS	Rectal Smooth Muscle	rectum
10	chr19:37957000-37958600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr19:37957000-37958600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr19:37957000-37958600	Active TSS	Aorta	Aorta
13	chr19:37957000-37958800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr19:37957000-37960600	Active TSS	Brain Angular Gyrus	brain
15	chr19:37957000-37960600	Active TSS	Brain Inferior Temporal Lobe	brain
16	chr19:37957000-37961000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr19:37957000-37961000	Active TSS	Fetal Intestine Large	intestine
18	chr19:37957000-37961000	Active TSS	Right Ventricle	heart
19	chr19:37957000-37961200	Active TSS	Right Atrium	heart
20	chr19:37957000-37961400	Active TSS	ES-I3 Cell Line	embryonic stem cell
21	chr19:37957000-37961400	Active TSS	iPS-20b Cell Line	embryonic stem cell
22	chr19:37957000-37961400	Active TSS	NH-A	brain
23	chr19:37957000-37961400	Active TSS	NHDF-Ad	bronchial
24	chr19:37957200-37958600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr19:37957200-37958600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr19:37957200-37958600	Active TSS	Muscle Satellite Cultured Cells	--
27	chr19:37957200-37958600	Active TSS	Brain Substantia Nigra	brain
28	chr19:37957200-37958600	Active TSS	Colonic Mucosa	Colon
29	chr19:37957200-37958600	Active TSS	Colon Smooth Muscle	Colon
30	chr19:37957200-37958600	Active TSS	Fetal Brain Male	brain
31	chr19:37957200-37958600	Active TSS	Fetal Kidney	kidney
32	chr19:37957200-37958600	Active TSS	Fetal Lung	lung
33	chr19:37957200-37958600	Active TSS	Thymus	Thymus
34	chr19:37957200-37958800	Active TSS	H1 Cell Line	embryonic stem cell
35	chr19:37957200-37958800	Active TSS	H9 Cell Line	embryonic stem cell
36	chr19:37957200-37958800	Active TSS	iPS-18 Cell Line	embryonic stem cell
37	chr19:37957200-37958800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr19:37957200-37958800	Active TSS	Fetal Intestine Small	intestine
39	chr19:37957200-37958800	Active TSS	HMEC	breast
40	chr19:37957200-37959000	Active TSS	K562	blood
41	chr19:37957200-37959800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr19:37957200-37960600	Active TSS	Primary hematopoietic stem cells short term culture	blood
43	chr19:37957200-37960800	Active TSS	Brain Anterior Caudate	brain
44	chr19:37957200-37960800	Active TSS	Fetal Brain Female	brain
45	chr19:37957200-37960800	Active TSS	NHEK	skin
46	chr19:37957200-37960800	Active TSS	Osteobl	bone
47	chr19:37957200-37961000	Active TSS	HSMM	muscle
48	chr19:37957200-37961200	Active TSS	iPS-15b Cell Line	embryonic stem cell
49	chr19:37957200-37961200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr19:37957200-37961200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin

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