Variant report

Variant	rs7255140
Chromosome Location	chr19:37971214-37971215
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:37970659..37972436-chr19:37977630..37979796,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000267381	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1015848	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1015849	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10403582	0.84[AMR][1000 genomes]
rs10407084	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10409204	0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10411574	0.82[AMR][1000 genomes]
rs10413602	0.85[AMR][1000 genomes]
rs10420430	0.85[AMR][1000 genomes]
rs10420722	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10422074	0.87[AMR][1000 genomes]
rs10422667	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10426618	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12972252	0.92[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12981532	0.85[AMR][1000 genomes]
rs13343471	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13343502	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2112920	0.81[AMR][1000 genomes]
rs2291004	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2303131	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs28538699	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35540940	0.80[AMR][1000 genomes]
rs35777021	0.85[AMR][1000 genomes]
rs4801759	0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4801803	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4802766	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4802889	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7246993	0.85[AMR][1000 genomes]
rs7252099	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7255952	0.80[ASN][1000 genomes]
rs7255972	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73631095	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs8106839	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs8109038	0.80[AMR][1000 genomes]
rs9676739	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1057688	chr19:37828019-37988253	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv833819	chr19:37899501-38051599	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1056753	chr19:37963714-38015943	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv579467	chr19:37969499-37972805	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37961000-37973000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr19:37961000-37974000	Weak transcription	Stomach Mucosa	stomach
3	chr19:37961400-37980400	ZNF genes & repeats	Liver	Liver
4	chr19:37962200-37976200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr19:37962200-37976400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
6	chr19:37962200-37977800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr19:37962200-37977800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr19:37962400-37977600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
9	chr19:37962400-37979200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr19:37963200-37976600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
11	chr19:37963200-37981000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr19:37963800-37976400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
13	chr19:37963800-37985600	ZNF genes & repeats	Adipose Nuclei	Adipose
14	chr19:37964000-37976400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
15	chr19:37964200-37977600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
16	chr19:37965800-37971600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr19:37966200-37976400	ZNF genes & repeats	Primary T cells from cord blood	blood
18	chr19:37966200-37979200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
19	chr19:37966200-37984000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
20	chr19:37966400-37976800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
21	chr19:37966600-37976000	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
22	chr19:37966600-37976200	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
23	chr19:37966600-37977800	ZNF genes & repeats	Fetal Lung	lung
24	chr19:37966600-37977800	ZNF genes & repeats	Dnd41	blood
25	chr19:37966800-37977600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr19:37967400-37972600	Weak transcription	NH-A	brain
27	chr19:37967800-37973000	Strong transcription	Muscle Satellite Cultured Cells	--
28	chr19:37968000-37971600	Weak transcription	Psoas Muscle	Psoas
29	chr19:37968000-37971600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr19:37968200-37971400	Weak transcription	HSMM	muscle
31	chr19:37968200-37971600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr19:37968200-37971600	Weak transcription	Brain Anterior Caudate	brain
33	chr19:37968200-37971600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr19:37968200-37971600	Weak transcription	Colonic Mucosa	Colon
35	chr19:37968200-37971600	Weak transcription	Fetal Brain Male	brain
36	chr19:37968200-37971600	Weak transcription	Fetal Thymus	thymus
37	chr19:37968200-37972600	Weak transcription	Brain Angular Gyrus	brain
38	chr19:37968200-37972600	Weak transcription	HSMMtube	muscle
39	chr19:37968200-37972600	Weak transcription	HUVEC	blood vessel
40	chr19:37968200-37973000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr19:37968400-37971600	Weak transcription	Pancreas	Pancrea
42	chr19:37968600-37971400	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr19:37968600-37971400	Weak transcription	Small Intestine	intestine
44	chr19:37968600-37971600	Weak transcription	Esophagus	oesophagus
45	chr19:37968600-37971600	Weak transcription	Fetal Muscle Trunk	muscle
46	chr19:37968600-37971600	Weak transcription	Right Ventricle	heart
47	chr19:37968600-37971600	Weak transcription	Thymus	Thymus
48	chr19:37968800-37971600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr19:37968800-37972200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr19:37969000-37971600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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