Variant report

Variant	rs10420722
Chromosome Location	chr19:37973774-37973775
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs1015848	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1015849	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1035479	0.85[EUR][1000 genomes]
rs10403582	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10403613	0.80[EUR][1000 genomes]
rs10404920	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10404945	0.86[EUR][1000 genomes]
rs10405064	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10405325	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10406177	0.88[EUR][1000 genomes]
rs10407084	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10409204	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10411574	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10413602	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10417503	0.80[EUR][1000 genomes]
rs10420430	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10420754	0.94[EUR][1000 genomes]
rs10422074	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10422423	0.80[EUR][1000 genomes]
rs10422667	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10422967	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10426618	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11083426	0.90[EUR][1000 genomes]
rs12972252	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12979470	0.90[EUR][1000 genomes]
rs12981532	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13343471	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13343485	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13343502	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1382357	0.96[EUR][1000 genomes]
rs2045908	0.96[EUR][1000 genomes]
rs2081096	0.94[EUR][1000 genomes]
rs2112920	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2112922	0.89[EUR][1000 genomes]
rs2112923	0.92[EUR][1000 genomes]
rs2126977	0.91[EUR][1000 genomes]
rs2279148	0.89[EUR][1000 genomes]
rs2279149	0.89[EUR][1000 genomes]
rs2291004	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2303131	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28373708	0.96[EUR][1000 genomes]
rs28402338	0.80[EUR][1000 genomes]
rs28538699	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28605784	0.94[EUR][1000 genomes]
rs28623164	0.90[EUR][1000 genomes]
rs2891699	0.90[EUR][1000 genomes]
rs35085437	0.80[EUR][1000 genomes]
rs35540940	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35777021	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3760825	0.92[EUR][1000 genomes]
rs3803895	0.85[EUR][1000 genomes]
rs4417644	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4801759	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4801803	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4802766	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4802889	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4803195	0.84[EUR][1000 genomes]
rs4803229	0.81[EUR][1000 genomes]
rs4803460	0.85[EUR][1000 genomes]
rs4803539	0.85[EUR][1000 genomes]
rs4969487	0.80[EUR][1000 genomes]
rs59224125	0.94[EUR][1000 genomes]
rs6508732	0.92[EUR][1000 genomes]
rs6508733	0.92[EUR][1000 genomes]
rs713256	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7246993	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7248733	0.90[EUR][1000 genomes]
rs7252099	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7252325	0.90[EUR][1000 genomes]
rs7252346	0.90[EUR][1000 genomes]
rs7253091	0.94[EUR][1000 genomes]
rs7253114	0.93[EUR][1000 genomes]
rs7255140	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7255407	0.90[EUR][1000 genomes]
rs7255785	0.92[EUR][1000 genomes]
rs7255952	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7255972	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7255996	0.92[EUR][1000 genomes]
rs7256130	0.87[EUR][1000 genomes]
rs73631095	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8106839	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8109038	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8109632	0.90[EUR][1000 genomes]
rs8111782	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8112610	0.87[EUR][1000 genomes]
rs9304566	0.80[EUR][1000 genomes]
rs9676739	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9676967	0.90[EUR][1000 genomes]
rs9917081	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1057688	chr19:37828019-37988253	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv833819	chr19:37899501-38051599	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1056753	chr19:37963714-38015943	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37961000-37974000	Weak transcription	Stomach Mucosa	stomach
2	chr19:37961400-37980400	ZNF genes & repeats	Liver	Liver
3	chr19:37962200-37976200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr19:37962200-37976400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
5	chr19:37962200-37977800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr19:37962200-37977800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr19:37962400-37977600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
8	chr19:37962400-37979200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr19:37963200-37976600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
10	chr19:37963200-37981000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr19:37963800-37976400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
12	chr19:37963800-37985600	ZNF genes & repeats	Adipose Nuclei	Adipose
13	chr19:37964000-37976400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
14	chr19:37964200-37977600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
15	chr19:37966200-37976400	ZNF genes & repeats	Primary T cells from cord blood	blood
16	chr19:37966200-37979200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
17	chr19:37966200-37984000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
18	chr19:37966400-37976800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
19	chr19:37966600-37976000	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
20	chr19:37966600-37976200	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
21	chr19:37966600-37977800	ZNF genes & repeats	Fetal Lung	lung
22	chr19:37966600-37977800	ZNF genes & repeats	Dnd41	blood
23	chr19:37966800-37977600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr19:37969400-37977400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
25	chr19:37969400-37978200	ZNF genes & repeats	Brain Hippocampus Middle	brain
26	chr19:37969600-37975800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr19:37969800-37976400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
28	chr19:37970200-37978000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr19:37970200-37979000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr19:37970800-37977800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
31	chr19:37971000-37973800	ZNF genes & repeats	Fetal Intestine Small	intestine
32	chr19:37971000-37974000	ZNF genes & repeats	Aorta	Aorta
33	chr19:37971000-37974000	ZNF genes & repeats	Lung	lung
34	chr19:37971000-37974200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr19:37971000-37974200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
36	chr19:37971000-37974200	ZNF genes & repeats	Spleen	Spleen
37	chr19:37971000-37975800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr19:37971000-37976000	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
39	chr19:37971000-37976200	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
40	chr19:37971000-37976200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
41	chr19:37971000-37976400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr19:37971000-37976600	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
43	chr19:37971000-37977000	ZNF genes & repeats	Left Ventricle	heart
44	chr19:37971000-37977000	ZNF genes & repeats	Ovary	ovary
45	chr19:37971000-37977200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr19:37971000-37977800	ZNF genes & repeats	Brain Germinal Matrix	brain
47	chr19:37971000-37979200	ZNF genes & repeats	Fetal Brain Female	brain
48	chr19:37971200-37976600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
49	chr19:37971400-37976000	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
50	chr19:37971400-37976200	ZNF genes & repeats	Primary B cells from cord blood	blood

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