Variant report

Variant	rs4803195
Chromosome Location	chr19:38015006-38015007
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1015848	0.81[EUR][1000 genomes]
rs1015849	0.81[EUR][1000 genomes]
rs10404945	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs10406177	0.80[ASN][1000 genomes]
rs10411574	0.89[EUR][1000 genomes]
rs10420722	0.84[EUR][1000 genomes]
rs10420754	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10422667	0.81[EUR][1000 genomes]
rs10426618	0.81[EUR][1000 genomes]
rs11083426	0.92[EUR][1000 genomes]
rs12972252	0.81[EUR][1000 genomes]
rs12979470	0.81[EUR][1000 genomes]
rs13343502	0.83[EUR][1000 genomes]
rs1382357	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2045908	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2081096	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2112923	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2126977	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2279148	0.91[EUR][1000 genomes]
rs2279149	0.91[EUR][1000 genomes]
rs2291004	0.88[EUR][1000 genomes]
rs28373708	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28538699	0.83[EUR][1000 genomes]
rs28605784	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28623164	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2891699	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35540940	0.90[EUR][1000 genomes]
rs3760825	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4801759	0.81[EUR][1000 genomes]
rs4801803	0.83[EUR][1000 genomes]
rs4802766	0.85[EUR][1000 genomes]
rs4802889	0.88[EUR][1000 genomes]
rs4803460	0.80[ASN][1000 genomes]
rs59224125	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6508732	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6508733	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7248733	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7252325	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7252346	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7253091	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7253114	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7255407	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7255785	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7255952	0.91[EUR][1000 genomes]
rs7255996	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7256130	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs73631095	0.83[EUR][1000 genomes]
rs8106839	0.84[EUR][1000 genomes]
rs8109038	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8109632	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8112610	0.85[ASN][1000 genomes]
rs9676739	0.83[EUR][1000 genomes]
rs9676967	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv833819	chr19:37899501-38051599	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1056753	chr19:37963714-38015943	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37998800-38021000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr19:37998800-38022600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr19:37999000-38028800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr19:37999200-38018400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr19:38002000-38028800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
6	chr19:38006000-38020800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr19:38008800-38026600	Weak transcription	Fetal Heart	heart
8	chr19:38009400-38020000	ZNF genes & repeats	Fetal Intestine Small	intestine
9	chr19:38010600-38018400	Strong transcription	Fetal Brain Female	brain
10	chr19:38010600-38020600	Strong transcription	Fetal Muscle Leg	muscle
11	chr19:38010800-38020400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
12	chr19:38010800-38020800	Strong transcription	Brain Anterior Caudate	brain
13	chr19:38011000-38020800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
14	chr19:38011600-38023600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr19:38011800-38016600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr19:38012800-38020800	Strong transcription	Fetal Muscle Trunk	muscle
17	chr19:38013000-38015600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr19:38013000-38015800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr19:38013000-38015800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr19:38013000-38016000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
21	chr19:38013000-38017600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
22	chr19:38013000-38017800	ZNF genes & repeats	Ovary	ovary
23	chr19:38013200-38015600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
24	chr19:38013200-38015800	ZNF genes & repeats	Aorta	Aorta
25	chr19:38013200-38015800	ZNF genes & repeats	Left Ventricle	heart
26	chr19:38013200-38016200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
27	chr19:38013200-38018000	ZNF genes & repeats	Fetal Stomach	stomach
28	chr19:38013200-38019600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr19:38013200-38020400	Strong transcription	H1 Cell Line	embryonic stem cell
30	chr19:38013200-38020800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr19:38013200-38020800	Strong transcription	Brain Cingulate Gyrus	brain
32	chr19:38013400-38015200	Strong transcription	NH-A	brain
33	chr19:38013400-38015800	Strong transcription	Fetal Intestine Large	intestine
34	chr19:38013400-38015800	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
35	chr19:38013400-38016000	ZNF genes & repeats	Primary T cells from cord blood	blood
36	chr19:38013400-38016000	Strong transcription	Brain Substantia Nigra	brain
37	chr19:38013400-38016000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
38	chr19:38013400-38016000	ZNF genes & repeats	Psoas Muscle	Psoas
39	chr19:38013400-38016200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
40	chr19:38013400-38017000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr19:38013400-38017600	Strong transcription	Brain Angular Gyrus	brain
42	chr19:38013400-38017800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
43	chr19:38013400-38018200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr19:38013400-38020600	ZNF genes & repeats	Liver	Liver
45	chr19:38013400-38020800	Strong transcription	Brain Germinal Matrix	brain
46	chr19:38013400-38020800	Strong transcription	Placenta Amnion	Placenta Amnion
47	chr19:38013600-38015400	Strong transcription	Brain Hippocampus Middle	brain
48	chr19:38013600-38015600	Strong transcription	Right Ventricle	heart
49	chr19:38013600-38016000	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr19:38013600-38016000	Strong transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links