Variant report

Variant	rs4801759
Chromosome Location	chr19:37954985-37954986
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 139 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:134)

rs_ID	r²[population]
rs1015848	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1015849	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1035479	0.90[EUR][1000 genomes]
rs10403173	0.81[ASW][hapmap]
rs10403582	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10403613	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10404031	0.81[ASW][hapmap]
rs10404602	0.84[EUR][1000 genomes]
rs10404920	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10404945	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs10405064	0.94[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.86[MEX][hapmap];0.82[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10405325	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10405407	1.00[CEU][hapmap];0.84[JPT][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs10406177	1.00[CEU][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs10406379	0.81[ASW][hapmap]
rs10407084	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10409204	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10411574	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10412043	0.82[EUR][1000 genomes]
rs10413602	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10414904	1.00[CEU][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes]
rs10415024	1.00[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap];0.83[YRI][hapmap];0.84[EUR][1000 genomes]
rs10415358	0.84[EUR][1000 genomes]
rs10415937	1.00[CEU][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes]
rs10417503	0.94[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.96[CHD][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];0.87[LWK][hapmap];0.86[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.85[EUR][1000 genomes]
rs10417844	0.93[CEU][hapmap];0.80[JPT][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs10420430	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10420722	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10420754	1.00[CEU][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10422074	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10422423	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10422667	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10422967	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10424574	0.94[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.96[CHD][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];0.87[LWK][hapmap];0.86[MEX][hapmap];0.89[MKK][hapmap];0.90[TSI][hapmap];0.96[YRI][hapmap];0.84[EUR][1000 genomes]
rs10426618	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10426666	0.84[EUR][1000 genomes]
rs10426699	0.84[EUR][1000 genomes]
rs11083426	0.87[EUR][1000 genomes]
rs12104380	0.81[EUR][1000 genomes]
rs12104381	0.83[EUR][1000 genomes]
rs12709813	0.83[EUR][1000 genomes]
rs12972252	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12979470	0.95[EUR][1000 genomes]
rs12981532	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13343471	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13343485	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13343502	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13345116	1.00[CEU][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes]
rs13345148	0.82[EUR][1000 genomes]
rs1373991	1.00[CEU][hapmap];0.84[JPT][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs13744	0.81[ASW][hapmap]
rs1382357	1.00[CEU][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs1559229	1.00[CEU][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs1564208	0.81[ASW][hapmap]
rs16958863	0.81[ASW][hapmap]
rs1823061	0.85[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap]
rs2045908	0.93[EUR][1000 genomes]
rs2081096	1.00[CEU][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2112920	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2112922	0.92[EUR][1000 genomes]
rs2112923	1.00[CEU][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2126977	0.93[CEU][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs2279148	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs2279149	0.81[ASW][hapmap];0.93[CEU][hapmap];0.93[GIH][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs2291002	0.81[ASW][hapmap]
rs2291004	0.87[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.93[MEX][hapmap];0.91[MKK][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2303131	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28373708	0.93[EUR][1000 genomes]
rs28402338	0.85[EUR][1000 genomes]
rs28538699	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28605784	0.91[EUR][1000 genomes]
rs28623164	0.95[EUR][1000 genomes]
rs2891699	1.00[CEU][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs2927740	0.80[ASW][hapmap]
rs35085437	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35540940	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35777021	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3745765	1.00[CEU][hapmap];0.84[JPT][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs3760825	1.00[CEU][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3803895	0.90[EUR][1000 genomes]
rs3829688	0.81[ASW][hapmap]
rs4417644	0.93[ASW][hapmap];1.00[CEU][hapmap];0.96[CHD][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];0.87[LWK][hapmap];0.86[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4452075	1.00[CEU][hapmap];0.94[JPT][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs4801803	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4802024	0.81[ASW][hapmap]
rs4802766	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4802889	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4803195	0.81[EUR][1000 genomes]
rs4803210	0.82[CEU][hapmap]
rs4803229	1.00[CEU][hapmap];0.94[JPT][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes]
rs4803347	0.83[EUR][1000 genomes]
rs4803460	0.90[EUR][1000 genomes]
rs4803539	0.90[EUR][1000 genomes]
rs4969487	0.85[EUR][1000 genomes]
rs59224125	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62110394	0.81[EUR][1000 genomes]
rs6508711	0.82[EUR][1000 genomes]
rs6508716	0.81[EUR][1000 genomes]
rs6508719	1.00[CEU][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs6508732	0.93[CEU][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs6508733	0.93[CEU][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes]
rs6508736	0.81[ASW][hapmap]
rs713256	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.86[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7246993	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7247259	1.00[CEU][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes]
rs7248733	0.93[CEU][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs7252099	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7252325	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7252346	1.00[CEU][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs7253091	1.00[CEU][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7253114	0.93[CEU][hapmap];0.87[GIH][hapmap];0.80[JPT][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs7255140	0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7255407	0.95[EUR][1000 genomes]
rs7255785	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7255952	0.93[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7255972	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7255996	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7256130	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7257495	0.82[EUR][1000 genomes]
rs7257672	1.00[CEU][hapmap];0.80[JPT][hapmap];0.82[EUR][1000 genomes]
rs7258692	1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.84[JPT][hapmap];0.82[MKK][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes]
rs7259968	0.82[EUR][1000 genomes]
rs73631095	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7408133	0.84[EUR][1000 genomes]
rs7408563	1.00[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap];0.84[EUR][1000 genomes]
rs8106839	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8109038	0.87[ASW][hapmap];0.93[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.82[MKK][hapmap];0.91[TSI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8109632	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8111782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8112610	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9304566	0.94[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.96[CHD][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];0.87[LWK][hapmap];0.86[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9676739	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9676967	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9917081	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1057688	chr19:37828019-37988253	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv833819	chr19:37899501-38051599	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs4801759	PLEKHG2	cis	cerebellum	SCAN
rs4801759	FAM98C	cis	cerebellum	SCAN
rs4801759	PAFAH1B3	cis	cerebellum	SCAN
rs4801759	DMPK	cis	parietal	SCAN
rs4801759	EXOSC5	cis	cerebellum	SCAN
rs4801759	LTBP4	cis	cerebellum	SCAN
rs4801759	BLVRB	cis	cerebellum	SCAN
rs4801759	CBLC	cis	parietal	SCAN
rs4801759	MEGF8	cis	cerebellum	SCAN
rs4801759	LIPE	cis	cerebellum	SCAN

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37898000-37956400	ZNF genes & repeats	Liver	Liver
2	chr19:37910800-37956000	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr19:37938000-37956000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr19:37938200-37956200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
5	chr19:37940800-37956800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr19:37942400-37956000	ZNF genes & repeats	Fetal Lung	lung
7	chr19:37942400-37956200	ZNF genes & repeats	Fetal Brain Female	brain
8	chr19:37942400-37957200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr19:37942600-37956000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr19:37942600-37956600	ZNF genes & repeats	Dnd41	blood
11	chr19:37943600-37956800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr19:37944200-37957000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr19:37944600-37956200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
14	chr19:37944600-37956400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr19:37944600-37957000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
16	chr19:37944800-37956200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr19:37944800-37956200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
18	chr19:37944800-37957000	ZNF genes & repeats	A549	lung
19	chr19:37946200-37957400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr19:37946800-37956800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr19:37946800-37957000	Weak transcription	NH-A	brain
22	chr19:37946800-37957200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr19:37947600-37955600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr19:37949200-37955800	ZNF genes & repeats	Primary B cells from cord blood	blood
25	chr19:37949600-37957000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr19:37950000-37955400	Weak transcription	HUVEC	blood vessel
27	chr19:37950400-37955400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr19:37950600-37955400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr19:37950800-37956200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr19:37951000-37956000	ZNF genes & repeats	Ovary	ovary
31	chr19:37951200-37956200	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
32	chr19:37951400-37957400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr19:37951600-37955000	Weak transcription	Fetal Stomach	stomach
34	chr19:37951600-37956000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr19:37951600-37957200	Weak transcription	Esophagus	oesophagus
36	chr19:37951600-37957400	Weak transcription	Gastric	stomach
37	chr19:37951800-37956200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr19:37951800-37957200	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr19:37951800-37957200	Weak transcription	Colonic Mucosa	Colon
40	chr19:37952200-37955600	Strong transcription	Placenta	Placenta
41	chr19:37952200-37956000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr19:37952200-37956000	Strong transcription	Thymus	Thymus
43	chr19:37952600-37956000	ZNF genes & repeats	HSMM	muscle
44	chr19:37952800-37955400	Weak transcription	NHLF	lung
45	chr19:37952800-37956200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr19:37952800-37956200	Strong transcription	Skeletal Muscle Male	skeletal muscle
47	chr19:37953000-37955000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr19:37953000-37956000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr19:37953200-37955400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr19:37953200-37955400	Strong transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links