Variant report

Variant	rs10405325
Chromosome Location	chr19:37883477-37883478
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 124 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs1015848	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1015849	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1035479	0.95[EUR][1000 genomes]
rs10403582	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10403613	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10404602	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10404920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10405064	0.80[AFR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10405407	0.87[EUR][1000 genomes]
rs10406177	0.90[EUR][1000 genomes]
rs10407084	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10409204	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10411574	0.83[EUR][1000 genomes]
rs10412043	0.86[EUR][1000 genomes]
rs10413602	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10414904	0.87[EUR][1000 genomes]
rs10415024	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10415358	0.89[EUR][1000 genomes]
rs10415937	0.87[EUR][1000 genomes]
rs10417503	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10417844	0.87[EUR][1000 genomes]
rs10420430	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10420722	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10420754	0.86[EUR][1000 genomes]
rs10422074	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10422423	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10422667	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10422967	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10424574	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10426297	0.80[EUR][1000 genomes]
rs10426618	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10426666	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10426699	0.89[EUR][1000 genomes]
rs12104380	0.84[EUR][1000 genomes]
rs12104381	0.86[EUR][1000 genomes]
rs12709812	0.82[EUR][1000 genomes]
rs12709813	0.87[EUR][1000 genomes]
rs12972252	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12979470	0.90[EUR][1000 genomes]
rs12981532	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13343471	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13343485	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13343502	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13345116	0.87[EUR][1000 genomes]
rs13345148	0.87[EUR][1000 genomes]
rs1373991	0.87[EUR][1000 genomes]
rs1382357	0.84[EUR][1000 genomes]
rs1559229	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1823061	0.82[EUR][1000 genomes]
rs2045908	0.84[EUR][1000 genomes]
rs2081096	0.86[EUR][1000 genomes]
rs2112920	0.80[ASN][1000 genomes]
rs2112922	0.83[EUR][1000 genomes]
rs2112923	0.88[EUR][1000 genomes]
rs2291004	0.82[EUR][1000 genomes]
rs2303131	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28373708	0.84[EUR][1000 genomes]
rs28402338	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28538699	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28605784	0.82[EUR][1000 genomes]
rs28623164	0.90[EUR][1000 genomes]
rs2891699	0.90[EUR][1000 genomes]
rs35085437	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35540940	0.82[EUR][1000 genomes]
rs35777021	0.80[AFR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3745765	0.89[EUR][1000 genomes]
rs3760825	0.88[EUR][1000 genomes]
rs3803895	0.95[EUR][1000 genomes]
rs4417644	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4452075	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4801759	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4801803	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4802766	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4802889	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4803229	0.91[EUR][1000 genomes]
rs4803347	0.87[EUR][1000 genomes]
rs4803460	0.95[EUR][1000 genomes]
rs4803539	0.95[EUR][1000 genomes]
rs4969487	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59224125	0.86[EUR][1000 genomes]
rs6508711	0.87[EUR][1000 genomes]
rs6508713	0.80[EUR][1000 genomes]
rs6508714	0.80[EUR][1000 genomes]
rs6508715	0.80[EUR][1000 genomes]
rs6508716	0.86[EUR][1000 genomes]
rs6508719	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6508732	0.81[EUR][1000 genomes]
rs6508733	0.81[EUR][1000 genomes]
rs67293224	0.82[EUR][1000 genomes]
rs713256	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7246993	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7247259	0.87[EUR][1000 genomes]
rs7252099	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7252325	0.90[EUR][1000 genomes]
rs7252346	0.90[EUR][1000 genomes]
rs7253091	0.86[EUR][1000 genomes]
rs7253114	0.81[EUR][1000 genomes]
rs7255407	0.90[EUR][1000 genomes]
rs7255785	0.84[EUR][1000 genomes]
rs7255952	0.81[EUR][1000 genomes]
rs7255972	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7255996	0.84[EUR][1000 genomes]
rs7256130	0.87[EUR][1000 genomes]
rs7257495	0.87[EUR][1000 genomes]
rs7257672	0.87[EUR][1000 genomes]
rs7258692	0.89[EUR][1000 genomes]
rs7259968	0.87[EUR][1000 genomes]
rs73631095	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7408133	0.89[EUR][1000 genomes]
rs7408563	0.89[EUR][1000 genomes]
rs8106839	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8109632	0.90[EUR][1000 genomes]
rs8111782	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8112610	0.87[EUR][1000 genomes]
rs9304566	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9676739	0.85[EUR][1000 genomes]
rs9676967	0.90[EUR][1000 genomes]
rs9917081	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1057688	chr19:37828019-37988253	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1058788	chr19:37857748-37899157	ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv579465	chr19:37868552-37917692	ZNF genes & repeats Strong transcription Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37864600-37890600	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr19:37868000-37886600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr19:37881400-37885200	Weak transcription	Pancreas	Pancrea
4	chr19:37883400-37883600	ZNF genes & repeats	Aorta	Aorta
5	chr19:37883400-37883600	ZNF genes & repeats	Ovary	ovary
6	chr19:37883400-37883800	ZNF genes & repeats	Brain Angular Gyrus	brain
7	chr19:37883400-37883800	ZNF genes & repeats	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links