Variant report

Variant	rs10405064
Chromosome Location	chr19:37861861-37861862
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr19:37861673-37862645	MCF10A-Er-Src	breast:	n/a	chr19:37861872-37861881
2	SIX5	chr19:37861652-37862193	H1-hESC	embryonic stem cell:	n/a	chr19:37861911-37861920 chr19:37861909-37861918 chr19:37861908-37861922
3	MYC	chr19:37861785-37862208	K562	blood:	n/a	n/a
4	FOXM1	chr19:37861694-37862188	GM12878	blood:	n/a	n/a
5	NRF1	chr19:37861429-37862794	SK-N-SH	brain:	n/a	chr19:37861871-37861882 chr19:37861871-37861885 chr19:37861775-37861784
6	POLR2A	chr19:37861342-37862657	GM12878	blood:	n/a	n/a
7	MXI1	chr19:37861537-37862522	GM12878	blood:	n/a	n/a
8	SIN3A	chr19:37861620-37862468	GM12878	blood:	n/a	n/a
9	MAX	chr19:37861581-37862671	MCF-7	breast:	n/a	chr19:37861651-37861659
10	MAX	chr19:37861712-37862395	MCF-7	breast:	n/a	n/a
11	TCF3	chr19:37861692-37862580	GM12878	blood:	n/a	chr19:37862484-37862499 chr19:37862488-37862501
12	POLR2A	chr19:37861634-37862664	PBDE	blood:	n/a	n/a
13	TAF1	chr19:37861638-37862173	Hela-S3	cervix:	n/a	n/a
14	YY1	chr19:37861691-37862147	GM12891	blood:	n/a	chr19:37861891-37861902 chr19:37861893-37861902 chr19:37861774-37861788
15	POLR2A	chr19:37861637-37861890	H1-hESC	embryonic stem cell:	n/a	n/a
16	POLR2A	chr19:37861598-37862279	A549	lung:	n/a	n/a
17	CTCF	chr19:37861780-37861930	AG04450	lung:	n/a	n/a
18	CHD2	chr19:37861649-37862378	Hela-S3	cervix:	n/a	n/a
19	POLR2A	chr19:37861569-37862422	Hela-S3	cervix:	n/a	n/a
20	POLR2A	chr19:37861567-37862414	A549	lung:	n/a	n/a
21	POLR2A	chr19:37861495-37862375	ProgFib	skin:	n/a	n/a
22	POLR2A	chr19:37861585-37862333	HepG2	liver:	n/a	n/a
23	MAX	chr19:37861511-37862579	HepG2	liver:	n/a	chr19:37861651-37861659
24	POLR2A	chr19:37861522-37862444	ECC-1	luminal epithelium:	n/a	n/a
25	ZNF143	chr19:37861531-37862364	GM12878	blood:	n/a	chr19:37861902-37861920 chr19:37861909-37861918 chr19:37861911-37861920 chr19:37861946-37861964
26	ZBTB33	chr19:37861558-37862321	A549	lung:	n/a	chr19:37862147-37862157
27	ATF3	chr19:37861795-37861990	K562	blood:	n/a	n/a
28	MYBL2	chr19:37861590-37862145	HepG2	liver:	n/a	n/a
29	TBP	chr19:37861513-37862361	GM12878	blood:	n/a	n/a
30	POLR2A	chr19:37861565-37862430	HL-60	blood:	n/a	n/a
31	USF2	chr19:37861770-37862180	H1-hESC	embryonic stem cell:	n/a	chr19:37862143-37862159
32	SIX5	chr19:37861422-37862509	A549	lung:	n/a	chr19:37861911-37861920 chr19:37861909-37861918 chr19:37861908-37861922
33	MAX	chr19:37861644-37862544	H1-hESC	embryonic stem cell:	n/a	chr19:37861651-37861659
34	POLR2A	chr19:37861525-37862453	GM18505	blood:	n/a	n/a
35	E2F6	chr19:37861584-37862501	A549	lung:	n/a	chr19:37861872-37861881
36	POLR2A	chr19:37861436-37862538	HUVEC	blood vessel:	n/a	n/a
37	POLR2A	chr19:37861666-37862326	HepG2	liver:	n/a	n/a
38	SIN3AK20	chr19:37861553-37862610	PANC-1	pancreas:	n/a	n/a
39	POLR2A	chr19:37861314-37862616	PANC-1	pancreas:	n/a	n/a
40	RELA	chr19:37861478-37862582	GM19193	blood:	n/a	n/a
41	TEAD4	chr19:37861796-37862179	H1-hESC	embryonic stem cell:	n/a	n/a
42	ZBTB33	chr19:37861431-37862539	A549	lung:	n/a	chr19:37862147-37862157
43	POLR2A	chr19:37861569-37862379	GM15510	blood:	n/a	n/a
44	FOXP2	chr19:37861644-37862278	PFSK-1	brain:	n/a	n/a
45	ELF1	chr19:37861705-37862216	HepG2	liver:	n/a	n/a
46	PML	chr19:37861586-37862323	GM12878	blood:	n/a	n/a
47	ZNF143	chr19:37861615-37862476	H1-hESC	embryonic stem cell:	n/a	chr19:37861902-37861920 chr19:37861909-37861918 chr19:37861911-37861920 chr19:37861946-37861964
48	POLR2A	chr19:37861587-37862399	HEK293	kidney:	n/a	n/a
49	POLR2A	chr19:37861526-37862299	SK-N-MC	brain:	n/a	n/a
50	ARID3A	chr19:37861654-37862744	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:37851946..37854387-chr19:37859960..37862069,2	MCF-7	breast:
2	chr19:37860446..37862285-chr19:38041060..38043682,2	K562	blood:

Variant related genes	Relation type
ZNF527	TF binding region
ENSG00000267470	Chromatin interaction
ENSG00000181666	Chromatin interaction
ENSG00000171817	Chromatin interaction

Extended variants
information (count: 141 )
Associated
traits (count: 11 )

rSNPs within LD-proxies of this variant (count:135)

rs_ID	r²[population]
rs1015848	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1015849	0.82[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1035479	0.87[EUR][1000 genomes]
rs10403582	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10403613	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10404031	0.88[ASW][hapmap]
rs10404602	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10404920	0.94[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10404945	0.93[CEU][hapmap]
rs10405325	0.80[AFR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10405407	1.00[CEU][hapmap];0.87[GIH][hapmap];0.84[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs10406177	1.00[CEU][hapmap];0.80[GIH][hapmap];0.94[JPT][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs10406379	0.88[ASW][hapmap]
rs10407084	0.82[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10409204	0.94[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.86[MEX][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10412043	0.94[EUR][1000 genomes]
rs10413602	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10414904	1.00[CEU][hapmap];0.84[JPT][hapmap];0.95[EUR][1000 genomes]
rs10415024	1.00[CEU][hapmap];0.87[CHB][hapmap];0.84[JPT][hapmap];0.86[YRI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10415358	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10415937	1.00[CEU][hapmap];0.84[JPT][hapmap];0.95[EUR][1000 genomes]
rs10417503	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10417844	0.93[CEU][hapmap];0.87[GIH][hapmap];0.80[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs10420430	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10420722	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10420754	1.00[CEU][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs10422074	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10422423	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10422667	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10422967	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10424574	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10426297	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10426618	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10426666	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10426699	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12104380	0.92[EUR][1000 genomes]
rs12104381	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12709812	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12709813	0.95[EUR][1000 genomes]
rs12972252	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12979470	0.86[EUR][1000 genomes]
rs12981532	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12982333	0.85[EUR][1000 genomes]
rs13343471	0.94[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.86[MEX][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13343485	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13343502	0.82[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13345116	1.00[CEU][hapmap];0.84[JPT][hapmap];0.95[EUR][1000 genomes]
rs13345148	0.95[EUR][1000 genomes]
rs1373991	1.00[CEU][hapmap];0.87[GIH][hapmap];0.84[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs1382357	1.00[CEU][hapmap];0.80[GIH][hapmap];0.94[JPT][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs1529957	0.86[CEU][hapmap]
rs1559229	1.00[CEU][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes]
rs1564208	0.88[ASW][hapmap]
rs1823061	0.85[CEU][hapmap];0.87[CHB][hapmap];0.84[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2045908	0.81[EUR][1000 genomes]
rs2081096	1.00[CEU][hapmap];0.80[GIH][hapmap];0.94[JPT][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs2112922	0.81[EUR][1000 genomes]
rs2112923	1.00[CEU][hapmap];0.80[GIH][hapmap];0.94[JPT][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs2126977	0.93[CEU][hapmap];0.80[GIH][hapmap];0.94[JPT][hapmap];0.95[TSI][hapmap]
rs2279148	0.93[CEU][hapmap]
rs2279149	0.88[ASW][hapmap];0.93[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap]
rs2291002	0.88[ASW][hapmap]
rs2291004	0.81[ASW][hapmap];0.93[CEU][hapmap];0.93[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.86[TSI][hapmap]
rs2303131	0.94[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.86[MEX][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28373708	0.81[EUR][1000 genomes]
rs28402338	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28538699	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28623164	0.86[EUR][1000 genomes]
rs2891699	1.00[CEU][hapmap];0.80[GIH][hapmap];0.94[JPT][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes]
rs34544865	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34603719	0.82[EUR][1000 genomes]
rs35085437	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35777021	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3745765	1.00[CEU][hapmap];0.87[GIH][hapmap];0.84[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs3760825	1.00[CEU][hapmap];0.80[GIH][hapmap];0.94[JPT][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs3803895	0.87[EUR][1000 genomes]
rs4417644	1.00[ASW][hapmap];1.00[CEU][hapmap];0.80[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4452075	1.00[CEU][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs4801759	0.94[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.86[MEX][hapmap];0.82[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4801803	0.87[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.86[MEX][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4802024	0.88[ASW][hapmap]
rs4802766	0.83[EUR][1000 genomes]
rs4802889	0.80[EUR][1000 genomes]
rs4803210	0.82[CEU][hapmap]
rs4803229	1.00[CEU][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs4803347	0.95[EUR][1000 genomes]
rs4803460	0.87[EUR][1000 genomes]
rs4803539	0.87[EUR][1000 genomes]
rs4969487	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57795776	0.84[EUR][1000 genomes]
rs59224125	0.83[EUR][1000 genomes]
rs6508711	0.95[EUR][1000 genomes]
rs6508713	0.86[EUR][1000 genomes]
rs6508714	0.86[EUR][1000 genomes]
rs6508715	0.86[EUR][1000 genomes]
rs6508716	0.94[EUR][1000 genomes]
rs6508719	1.00[CEU][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes]
rs6508732	0.93[CEU][hapmap];0.80[GIH][hapmap];0.94[JPT][hapmap];0.91[TSI][hapmap]
rs6508733	0.93[CEU][hapmap];0.94[JPT][hapmap]
rs6508736	0.88[ASW][hapmap]
rs67293224	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs713256	0.94[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7246657	0.86[CEU][hapmap];0.87[GIH][hapmap];0.80[JPT][hapmap];0.81[TSI][hapmap]
rs7246993	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7247259	1.00[CEU][hapmap];0.84[JPT][hapmap];0.95[EUR][1000 genomes]
rs7248733	0.93[CEU][hapmap];0.94[JPT][hapmap];0.86[TSI][hapmap]
rs7252099	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7252325	0.86[EUR][1000 genomes]
rs7252346	1.00[CEU][hapmap];0.80[GIH][hapmap];0.94[JPT][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes]
rs7253091	1.00[CEU][hapmap];0.80[GIH][hapmap];0.94[JPT][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs7253114	0.93[CEU][hapmap];0.80[GIH][hapmap];0.80[JPT][hapmap];0.95[TSI][hapmap]
rs7255407	0.86[EUR][1000 genomes]
rs7255785	0.81[EUR][1000 genomes]
rs7255952	0.93[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap]
rs7255972	0.82[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7255996	0.81[EUR][1000 genomes]
rs7256130	0.83[EUR][1000 genomes]
rs7257495	0.95[EUR][1000 genomes]
rs7257672	1.00[CEU][hapmap];0.80[JPT][hapmap];0.95[EUR][1000 genomes]
rs7258692	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7259968	0.95[EUR][1000 genomes]
rs73631095	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7408133	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7408446	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7408563	1.00[CEU][hapmap];0.87[CHB][hapmap];0.84[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8106839	1.00[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8109038	0.81[ASW][hapmap];0.93[CEU][hapmap];0.87[CHB][hapmap];0.85[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.86[TSI][hapmap]
rs8109632	0.86[EUR][1000 genomes]
rs8111782	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8112011	0.87[CHB][hapmap]
rs8112610	0.83[EUR][1000 genomes]
rs9304566	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9676739	0.81[EUR][1000 genomes]
rs9676967	0.86[EUR][1000 genomes]
rs9917081	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1057688	chr19:37828019-37988253	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1058788	chr19:37857748-37899157	ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv579464	chr19:37858660-37881556	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:11)

SNP	Gene	Cis/trans	Tissue	Source
rs10405064	EXOSC5	cis	cerebellum	SCAN
rs10405064	CYP2B6	cis	cerebellum	SCAN
rs10405064	FAM98C	cis	cerebellum	SCAN
rs10405064	HIPK4	cis	parietal	SCAN
rs10405064	BLVRB	cis	cerebellum	SCAN
rs10405064	LIPE	cis	cerebellum	SCAN
rs10405064	DMPK	cis	parietal	SCAN
rs10405064	MEGF8	cis	cerebellum	SCAN
rs10405064	PAFAH1B3	cis	cerebellum	SCAN
rs10405064	CBLC	cis	parietal	SCAN
rs10405064	PLEKHG2	cis	cerebellum	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37860600-37862400	Active TSS	Rectal Mucosa Donor 29	rectum
2	chr19:37860600-37862400	Active TSS	Stomach Smooth Muscle	stomach
3	chr19:37860600-37862600	Active TSS	Duodenum Smooth Muscle	Duodenum
4	chr19:37860600-37862600	Active TSS	Stomach Mucosa	stomach
5	chr19:37860600-37862600	Active TSS	GM12878-XiMat	blood
6	chr19:37860800-37862200	Active TSS	Brain Cingulate Gyrus	brain
7	chr19:37860800-37862200	Active TSS	Rectal Smooth Muscle	rectum
8	chr19:37860800-37862400	Active TSS	Brain Angular Gyrus	brain
9	chr19:37860800-37862400	Active TSS	Rectal Mucosa Donor 31	rectum
10	chr19:37860800-37862400	Active TSS	NHDF-Ad	bronchial
11	chr19:37860800-37862600	Active TSS	Colon Smooth Muscle	Colon
12	chr19:37860800-37862800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr19:37860800-37862800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr19:37860800-37863200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr19:37861000-37862200	Active TSS	Liver	Liver
16	chr19:37861000-37862200	Active TSS	Duodenum Mucosa	Duodenum
17	chr19:37861000-37862400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr19:37861000-37862400	Active TSS	Skeletal Muscle Male	skeletal muscle
19	chr19:37861000-37862800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr19:37861000-37862800	Active TSS	Right Ventricle	heart
21	chr19:37861200-37862200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
22	chr19:37861200-37862200	Active TSS	Primary T helper naive cells from peripheral blood	blood
23	chr19:37861200-37862200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
24	chr19:37861200-37862200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
25	chr19:37861200-37862200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr19:37861200-37862400	Active TSS	iPS-15b Cell Line	embryonic stem cell
27	chr19:37861200-37862400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr19:37861200-37862400	Active TSS	Breast Myoepithelial Primary Cells	Breast
29	chr19:37861200-37862400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr19:37861200-37862400	Active TSS	Brain Anterior Caudate	brain
31	chr19:37861200-37862400	Active TSS	Brain Germinal Matrix	brain
32	chr19:37861200-37862400	Active TSS	Brain Inferior Temporal Lobe	brain
33	chr19:37861200-37862400	Active TSS	Colonic Mucosa	Colon
34	chr19:37861200-37862400	Active TSS	Fetal Brain Female	brain
35	chr19:37861200-37862400	Active TSS	Fetal Kidney	kidney
36	chr19:37861200-37862400	Active TSS	Pancreatic Islets	Pancreatic Islet
37	chr19:37861200-37862400	Active TSS	Fetal Lung	lung
38	chr19:37861200-37862400	Active TSS	Fetal Stomach	stomach
39	chr19:37861200-37862400	Active TSS	NHLF	lung
40	chr19:37861200-37862600	Active TSS	HUES64 Cell Line	embryonic stem cell
41	chr19:37861200-37862600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr19:37861200-37862600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr19:37861200-37862600	Active TSS	Left Ventricle	heart
44	chr19:37861200-37862800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr19:37861200-37862800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr19:37861200-37862800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr19:37861200-37862800	Active TSS	Fetal Intestine Large	intestine
48	chr19:37861200-37862800	Active TSS	Fetal Intestine Small	intestine
49	chr19:37861200-37862800	Active TSS	Fetal Thymus	thymus
50	chr19:37861200-37862800	Active TSS	Psoas Muscle	Psoas

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