Variant report

Variant	rs7408446
Chromosome Location	chr19:37799473-37799474
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10403613	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10404602	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10404920	0.81[EUR][1000 genomes]
rs10405064	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10405407	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10412043	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10414904	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10415024	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10415358	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10415937	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10417503	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10417844	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10422423	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10422967	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10424574	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10426297	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10426666	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10426699	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12104380	0.83[EUR][1000 genomes]
rs12104381	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12709812	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12709813	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12982333	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13343485	0.80[EUR][1000 genomes]
rs13345116	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs13345148	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1373991	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1823061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28402338	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34544865	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34603719	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35085437	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3745765	0.83[EUR][1000 genomes]
rs4417644	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4452075	0.81[EUR][1000 genomes]
rs4803229	0.81[EUR][1000 genomes]
rs4803347	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4969487	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6508711	0.93[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6508713	0.88[AFR][1000 genomes]
rs6508714	0.87[AFR][1000 genomes]
rs6508715	0.87[AFR][1000 genomes]
rs6508716	0.94[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs67293224	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs713256	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7247259	0.84[EUR][1000 genomes]
rs7257495	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7257672	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7258692	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7259968	0.94[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7408133	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7408563	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8111782	0.81[EUR][1000 genomes]
rs9304566	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9917081	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	esv3520361	chr19:37745067-37811325	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3520362	chr19:37745067-37811325	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv978811	chr19:37749967-37820517	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7408446	ZNF793	cis	lung	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37796000-37801000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr19:37799200-37803400	Weak transcription	Aorta	Aorta

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