Variant report

Variant	rs34603719
Chromosome Location	chr19:37794528-37794529
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10403613	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10404602	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10405064	0.82[EUR][1000 genomes]
rs10405407	0.82[EUR][1000 genomes]
rs10412043	0.82[EUR][1000 genomes]
rs10414904	0.82[EUR][1000 genomes]
rs10415024	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10415358	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10415937	0.82[EUR][1000 genomes]
rs10417503	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10417844	0.82[EUR][1000 genomes]
rs10422423	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10422967	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10424574	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10426297	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10426666	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10426699	0.85[EUR][1000 genomes]
rs12104380	0.80[EUR][1000 genomes]
rs12104381	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12709812	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12709813	0.82[EUR][1000 genomes]
rs12982333	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13345116	0.82[EUR][1000 genomes]
rs13345148	0.83[EUR][1000 genomes]
rs1373991	0.82[EUR][1000 genomes]
rs1823061	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28402338	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34544865	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35085437	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4417644	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4803347	0.82[EUR][1000 genomes]
rs4969487	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6508711	0.83[EUR][1000 genomes]
rs6508716	0.82[EUR][1000 genomes]
rs67293224	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7247259	0.82[EUR][1000 genomes]
rs7257495	0.83[EUR][1000 genomes]
rs7257672	0.83[EUR][1000 genomes]
rs7258692	0.85[EUR][1000 genomes]
rs7259968	0.83[EUR][1000 genomes]
rs7408133	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7408446	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7408563	0.85[EUR][1000 genomes]
rs9304566	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv9717	chr19:37721760-37796698	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3520361	chr19:37745067-37811325	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv3520362	chr19:37745067-37811325	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv978811	chr19:37749967-37820517	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv821351	chr19:37756399-37796493	Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv12700	chr19:37756909-37794853	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv3337270	chr19:37758512-37795610	ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv3369946	chr19:37758512-37795610	ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv3377915	chr19:37758512-37795610	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv3416120	chr19:37758512-37795610	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
14	esv3430128	chr19:37758512-37795610	Weak transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
15	esv3390818	chr19:37758512-37795710	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
16	esv1808040	chr19:37760982-37794824	Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
17	esv1811915	chr19:37760982-37794824	ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
18	esv1822559	chr19:37760982-37794824	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
19	esv1830290	chr19:37760982-37794824	Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
20	esv1832481	chr19:37760982-37794824	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37784600-37794600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr19:37784800-37794600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr19:37785000-37794600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr19:37785000-37794600	Weak transcription	Colonic Mucosa	Colon
5	chr19:37785000-37794600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr19:37785600-37794600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr19:37785600-37794600	Weak transcription	Spleen	Spleen
8	chr19:37794000-37794600	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr19:37794400-37794600	Active TSS	Adipose Nuclei	Adipose
10	chr19:37794400-37794600	Enhancers	Brain Substantia Nigra	brain
11	chr19:37794400-37794600	Enhancers	Fetal Muscle Trunk	muscle
12	chr19:37794400-37795400	Active TSS	Brain Inferior Temporal Lobe	brain
13	chr19:37794400-37795400	Active TSS	Right Ventricle	heart
14	chr19:37794400-37795600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr19:37794400-37795600	Active TSS	Brain Hippocampus Middle	brain
16	chr19:37794400-37795600	ZNF genes & repeats	Esophagus	oesophagus
17	chr19:37794400-37795600	ZNF genes & repeats	Gastric	stomach
18	chr19:37794400-37795600	Active TSS	Left Ventricle	heart
19	chr19:37794400-37795800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
20	chr19:37794400-37795800	Active TSS	iPS-15b Cell Line	embryonic stem cell
21	chr19:37794400-37795800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr19:37794400-37795800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr19:37794400-37795800	Active TSS	Brain Cingulate Gyrus	brain
24	chr19:37794400-37795800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
25	chr19:37794400-37795800	Active TSS	Pancreatic Islets	Pancreatic Islet
26	chr19:37794400-37795800	Active TSS	Rectal Smooth Muscle	rectum
27	chr19:37794400-37795800	Active TSS	Stomach Smooth Muscle	stomach
28	chr19:37794400-37796000	ZNF genes & repeats	Brain Germinal Matrix	brain
29	chr19:37794400-37796400	ZNF genes & repeats	Pancreas	Pancrea
30	chr19:37794400-37796600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr19:37794400-37796600	ZNF genes & repeats	Liver	Liver
32	chr19:37794400-37796600	ZNF genes & repeats	Lung	lung
33	chr19:37794400-37797200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
34	chr19:37794400-37797200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
35	chr19:37794400-37797400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
36	chr19:37794400-37798400	ZNF genes & repeats	Fetal Brain Female	brain

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