Variant report

Variant	rs1823061
Chromosome Location	chr19:37800626-37800627
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs1015849	0.85[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap]
rs10403613	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10404602	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10404920	0.85[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes]
rs10405064	0.85[CEU][hapmap];0.87[CHB][hapmap];0.84[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10405325	0.82[EUR][1000 genomes]
rs10405407	0.85[CEU][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10406177	0.85[CEU][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap]
rs10407084	0.85[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap]
rs10409204	0.85[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap]
rs10412043	0.93[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10413602	0.80[EUR][1000 genomes]
rs10414904	0.86[CEU][hapmap];0.90[JPT][hapmap];0.97[YRI][hapmap];0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10415024	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10415358	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10415937	0.86[CEU][hapmap];0.90[JPT][hapmap];0.97[YRI][hapmap];0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10417503	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10417844	0.84[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10420430	0.80[EUR][1000 genomes]
rs10420754	0.85[CEU][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap]
rs10422074	0.80[EUR][1000 genomes]
rs10422423	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10422967	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10424574	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10426297	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10426666	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10426699	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12104380	0.86[EUR][1000 genomes]
rs12104381	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12709812	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12709813	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12981532	0.80[EUR][1000 genomes]
rs12982333	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13343471	0.85[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap]
rs13343485	0.85[EUR][1000 genomes]
rs13343502	0.85[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap]
rs13345116	0.86[CEU][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs13345148	0.93[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1373991	0.85[CEU][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1382357	0.85[CEU][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap]
rs1529957	1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs1559229	0.86[CEU][hapmap];0.90[JPT][hapmap];0.97[YRI][hapmap];0.82[EUR][1000 genomes]
rs2081096	0.85[CEU][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap]
rs2112923	0.85[CEU][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap]
rs2126977	0.90[JPT][hapmap]
rs2291004	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs2303131	0.85[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap]
rs28402338	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2891699	0.85[CEU][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap]
rs34544865	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34603719	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35085437	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3745765	0.85[CEU][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap];0.85[EUR][1000 genomes]
rs3760825	0.85[CEU][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap]
rs4417644	0.85[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4452075	0.85[CEU][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.83[EUR][1000 genomes]
rs4801759	0.85[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap]
rs4801803	0.85[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap]
rs4803229	0.85[CEU][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.83[EUR][1000 genomes]
rs4803347	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4969487	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6508711	0.93[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6508713	0.88[AFR][1000 genomes]
rs6508714	0.87[AFR][1000 genomes]
rs6508715	0.87[AFR][1000 genomes]
rs6508716	0.94[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6508719	0.93[CEU][hapmap];0.90[JPT][hapmap];0.97[YRI][hapmap];0.82[EUR][1000 genomes]
rs6508732	0.90[JPT][hapmap]
rs6508733	0.81[CEU][hapmap];0.90[JPT][hapmap]
rs67293224	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs713256	0.85[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7246657	1.00[CEU][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs7246993	0.80[EUR][1000 genomes]
rs7247259	0.86[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes]
rs7248733	0.90[JPT][hapmap]
rs7252346	0.85[CEU][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap]
rs7253091	0.85[CEU][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap]
rs7255972	0.85[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap]
rs7257495	0.93[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7257672	0.86[CEU][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7258692	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7259968	0.94[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7408133	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7408446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7408563	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8106839	0.85[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap]
rs8111782	0.86[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes]
rs8112011	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs9304566	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9917081	0.86[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	esv3520361	chr19:37745067-37811325	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3520362	chr19:37745067-37811325	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv978811	chr19:37749967-37820517	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37796000-37801000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr19:37799200-37803400	Weak transcription	Aorta	Aorta
3	chr19:37800200-37803400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr19:37800600-37801400	Enhancers	Dnd41	blood

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