Variant report

Variant	rs4803210
Chromosome Location	chr19:38022917-38022918
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1015849	0.82[CEU][hapmap]
rs10404920	0.82[CEU][hapmap]
rs10404945	0.88[CEU][hapmap]
rs10405064	0.82[CEU][hapmap]
rs10405407	0.82[CEU][hapmap]
rs10406177	0.82[CEU][hapmap]
rs10407084	0.82[CEU][hapmap]
rs10409204	0.82[CEU][hapmap]
rs10414904	0.83[CEU][hapmap]
rs10415937	0.83[CEU][hapmap]
rs10417503	0.82[CEU][hapmap]
rs10420754	0.82[CEU][hapmap]
rs10424574	0.82[CEU][hapmap]
rs13343471	0.82[CEU][hapmap]
rs13343502	0.82[CEU][hapmap]
rs13345116	0.83[CEU][hapmap]
rs1373991	0.82[CEU][hapmap]
rs1382357	0.82[CEU][hapmap]
rs1559229	0.83[CEU][hapmap]
rs2081096	0.82[CEU][hapmap]
rs2112923	0.82[CEU][hapmap]
rs2126977	0.88[CEU][hapmap]
rs2279148	0.88[CEU][hapmap]
rs2279149	0.88[CEU][hapmap]
rs2291004	0.88[CEU][hapmap]
rs2303131	0.82[CEU][hapmap]
rs2891699	0.82[CEU][hapmap]
rs3745765	0.82[CEU][hapmap]
rs3760825	0.82[CEU][hapmap]
rs4417644	0.82[CEU][hapmap]
rs4452075	0.82[CEU][hapmap]
rs4801759	0.82[CEU][hapmap]
rs4801803	0.82[CEU][hapmap]
rs4803229	0.82[CEU][hapmap]
rs6508719	0.82[CEU][hapmap]
rs6508732	0.88[CEU][hapmap]
rs6508733	0.88[CEU][hapmap]
rs713256	0.82[CEU][hapmap]
rs7247259	0.83[CEU][hapmap]
rs7248733	0.88[CEU][hapmap]
rs7252346	0.82[CEU][hapmap]
rs7253091	0.82[CEU][hapmap]
rs7253114	0.88[CEU][hapmap]
rs7255952	0.88[CEU][hapmap]
rs7255972	0.82[CEU][hapmap]
rs7257672	0.83[CEU][hapmap]
rs8106839	0.82[CEU][hapmap]
rs8109038	0.88[CEU][hapmap]
rs8111782	0.83[CEU][hapmap]
rs9304566	0.82[CEU][hapmap]
rs9917081	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv833819	chr19:37899501-38051599	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37999000-38028800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr19:38002000-38028800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
3	chr19:38008800-38026600	Weak transcription	Fetal Heart	heart
4	chr19:38011600-38023600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr19:38014800-38024000	Weak transcription	Stomach Mucosa	stomach
6	chr19:38017400-38028800	ZNF genes & repeats	Adipose Nuclei	Adipose
7	chr19:38017800-38023800	Weak transcription	Placenta	Placenta
8	chr19:38017800-38024000	Strong transcription	Brain Hippocampus Middle	brain
9	chr19:38018400-38025000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr19:38020000-38023800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr19:38020000-38024000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr19:38020800-38023000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr19:38020800-38023000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr19:38021600-38024000	Strong transcription	Stomach Smooth Muscle	stomach
15	chr19:38021600-38028800	ZNF genes & repeats	Primary T cells from cord blood	blood
16	chr19:38021600-38030200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
17	chr19:38021800-38023400	Strong transcription	Fetal Brain Female	brain
18	chr19:38021800-38023800	Strong transcription	Brain Substantia Nigra	brain
19	chr19:38021800-38028800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
20	chr19:38021800-38028800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr19:38021800-38028800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr19:38021800-38028800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr19:38021800-38028800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
24	chr19:38021800-38029800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr19:38021800-38030000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr19:38021800-38030800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
27	chr19:38021800-38031600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr19:38022000-38023400	ZNF genes & repeats	Fetal Intestine Large	intestine
29	chr19:38022000-38025000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
30	chr19:38022000-38028400	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
31	chr19:38022000-38028800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
32	chr19:38022000-38030600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
33	chr19:38022200-38025600	Strong transcription	Fetal Muscle Leg	muscle
34	chr19:38022200-38025800	ZNF genes & repeats	Pancreas	Pancrea
35	chr19:38022200-38026000	ZNF genes & repeats	Rectal Smooth Muscle	rectum
36	chr19:38022200-38027200	Strong transcription	Right Ventricle	heart
37	chr19:38022200-38028600	ZNF genes & repeats	Primary B cells from cord blood	blood
38	chr19:38022200-38028600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
39	chr19:38022200-38028600	ZNF genes & repeats	Fetal Stomach	stomach
40	chr19:38022200-38028800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
41	chr19:38022200-38028800	ZNF genes & repeats	Esophagus	oesophagus
42	chr19:38022200-38028800	ZNF genes & repeats	Fetal Intestine Small	intestine
43	chr19:38022200-38028800	ZNF genes & repeats	Left Ventricle	heart
44	chr19:38022200-38028800	ZNF genes & repeats	Spleen	Spleen
45	chr19:38022200-38029400	ZNF genes & repeats	Aorta	Aorta
46	chr19:38022200-38029600	ZNF genes & repeats	Ovary	ovary
47	chr19:38022200-38030200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr19:38022200-38037000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
49	chr19:38022400-38024600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr19:38022400-38025000	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle

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