Variant report
| Variant | rs11674129 |
|---|---|
| Chromosome Location | chr2:177669989-177669990 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:177669684..177672238-chr2:177673303..177676064,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000223777 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs10187286 | 0.83[EUR][1000 genomes] |
| rs10190557 | 0.82[EUR][1000 genomes] |
| rs11692259 | 0.81[EUR][1000 genomes] |
| rs1251034 | 0.82[EUR][1000 genomes] |
| rs1251035 | 0.81[EUR][1000 genomes] |
| rs12991908 | 0.81[EUR][1000 genomes] |
| rs12999377 | 0.81[EUR][1000 genomes] |
| rs13021258 | 0.88[CEU][hapmap] |
| rs13022517 | 0.80[CEU][hapmap] |
| rs2028188 | 0.82[EUR][1000 genomes] |
| rs2203300 | 0.92[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs2670674 | 0.81[EUR][1000 genomes] |
| rs2696970 | 0.82[EUR][1000 genomes] |
| rs9917347 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv527737 | chr2:177538266-177692572 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv583686 | chr2:177538266-177692572 | Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv1006500 | chr2:177548521-177707097 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:177669400-177670800 | Enhancers | Dnd41 | blood |
