Variant report

Variant	rs2670674
Chromosome Location	chr2:177657814-177657815
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10177590	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10178007	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10187286	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10190557	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10200938	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11674129	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs11678055	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11681760	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11688079	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11688181	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11692259	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1251032	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1251033	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1251034	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1251035	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12693106	0.81[CEU][hapmap]
rs12991908	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12993397	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12993530	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12999377	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13019320	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13021258	0.92[CEU][hapmap]
rs1398975	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1398976	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2028188	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2696970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34652621	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4021395	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4021396	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7562010	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7581696	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7601006	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7601248	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527737	chr2:177538266-177692572	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv583686	chr2:177538266-177692572	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1006500	chr2:177548521-177707097	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177655800-177658400	Weak transcription	Brain Germinal Matrix	brain
2	chr2:177657400-177658400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:177657600-177659400	Enhancers	Ovary	ovary
4	chr2:177657800-177658000	Enhancers	Psoas Muscle	Psoas

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