Variant report
| Variant | rs1251033 |
|---|---|
| Chromosome Location | chr2:177659993-177659994 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10177590 | 0.92[EUR][1000 genomes] |
| rs10178007 | 0.89[EUR][1000 genomes] |
| rs10187286 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs10190557 | 0.89[EUR][1000 genomes] |
| rs10200938 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs11678055 | 0.85[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs11681760 | 0.91[EUR][1000 genomes] |
| rs11688079 | 0.91[EUR][1000 genomes] |
| rs11688181 | 0.91[EUR][1000 genomes] |
| rs11692259 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs1251032 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs1251034 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1251035 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs12991908 | 0.90[EUR][1000 genomes] |
| rs12993397 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs12993530 | 0.91[EUR][1000 genomes] |
| rs12999377 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs13019320 | 0.91[EUR][1000 genomes] |
| rs13021258 | 0.85[CEU][hapmap] |
| rs1398975 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1398976 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs2028188 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs2670674 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2696970 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs34652621 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4021395 | 0.91[EUR][1000 genomes] |
| rs4021396 | 0.91[EUR][1000 genomes] |
| rs7562010 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7581696 | 0.91[EUR][1000 genomes] |
| rs7601006 | 0.91[EUR][1000 genomes] |
| rs7601248 | 0.91[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv527737 | chr2:177538266-177692572 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv583686 | chr2:177538266-177692572 | Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv1006500 | chr2:177548521-177707097 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:177658400-177660200 | Enhancers | Brain Germinal Matrix | brain |
| 2 | chr2:177659600-177660600 | Enhancers | Stomach Mucosa | stomach |
| 3 | chr2:177659800-177660200 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
