Variant report

Variant	rs10187286
Chromosome Location	chr2:177671018-177671019
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10177590	0.92[EUR][1000 genomes]
rs10178007	0.91[EUR][1000 genomes]
rs10190557	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10200938	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11674129	0.83[EUR][1000 genomes]
rs11678055	0.86[EUR][1000 genomes]
rs11681760	0.93[EUR][1000 genomes]
rs11688079	0.93[EUR][1000 genomes]
rs11688181	0.93[EUR][1000 genomes]
rs11692259	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1251032	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1251033	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1251034	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1251035	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12991908	0.92[EUR][1000 genomes]
rs12993397	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12993530	0.93[EUR][1000 genomes]
rs12999377	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13019320	0.93[EUR][1000 genomes]
rs1398975	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1398976	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2028188	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2670674	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2696970	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34652621	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4021395	0.93[EUR][1000 genomes]
rs4021396	0.93[EUR][1000 genomes]
rs7562010	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7581696	0.93[EUR][1000 genomes]
rs7601006	0.93[EUR][1000 genomes]
rs7601248	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527737	chr2:177538266-177692572	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv583686	chr2:177538266-177692572	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1006500	chr2:177548521-177707097	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links