Variant report

Variant	rs11676592
Chromosome Location	chr2:114790139-114790140
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11680166	1.00[AFR][1000 genomes]
rs11681925	1.00[AFR][1000 genomes]
rs11686283	1.00[AFR][1000 genomes]
rs11695436	1.00[CEU][hapmap]
rs13018007	1.00[AFR][1000 genomes]
rs13023671	0.89[CEU][hapmap];1.00[AFR][1000 genomes]
rs17046767	1.00[AFR][1000 genomes]
rs35820702	1.00[AFR][1000 genomes]
rs71416580	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874904	chr2:114751691-115605062	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114789200-114792200	Enhancers	Fetal Muscle Leg	muscle
2	chr2:114789400-114790400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr2:114789600-114791800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:114789800-114790200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr2:114789800-114790800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:114789800-114793000	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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