Variant report

Variant	rs17046767
Chromosome Location	chr2:114757209-114757210
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:114754437..114757265-chr2:114758141..114760380,3	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10496454	0.81[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11676281	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11676592	1.00[AFR][1000 genomes]
rs11678413	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11680166	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs11681425	0.81[CEU][hapmap];0.87[CHD][hapmap];0.90[MEX][hapmap];0.82[TSI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11681925	1.00[AFR][1000 genomes]
rs11686283	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11695436	0.86[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12996997	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13011246	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13023671	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17197639	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2046545	0.81[CEU][hapmap];0.87[CHD][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2292100	0.81[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34803179	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35596137	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35680405	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35820702	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs3748997	0.81[CEU][hapmap];0.87[CHD][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6711054	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6723553	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71416571	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71416580	1.00[AFR][1000 genomes]
rs72952576	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72954508	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7590041	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874904	chr2:114751691-115605062	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17046767	LOC440900	cis	multi-tissue	Pritchard
rs17046767	RPL23AP7	cis	multi-tissue	Pritchard

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114736200-114761000	Weak transcription	HSMMtube	muscle
2	chr2:114741200-114761000	Weak transcription	HSMM	muscle
3	chr2:114755200-114758000	Weak transcription	HepG2	liver
4	chr2:114755600-114768000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr2:114756800-114758200	Enhancers	Brain Germinal Matrix	brain
6	chr2:114757200-114758800	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links