Variant report

Variant	rs35680405
Chromosome Location	chr2:114675256-114675257
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:114668742..114673140-chr2:114673831..114676869,6	K562	blood:
2	chr2:114512877..114515552-chr2:114673985..114678016,3	K562	blood:
3	chr2:114647540..114650336-chr2:114674898..114676780,2	K562	blood:
4	chr2:114672608..114675280-chr2:114681471..114684124,3	K562	blood:
5	chr2:114669911..114672374-chr2:114673667..114676580,4	K562	blood:
6	chr2:114664146..114665930-chr2:114672543..114675415,2	K562	blood:
7	chr2:114645266..114650561-chr2:114670334..114676393,6	MCF-7	breast:
8	chr2:114662832..114665997-chr2:114671903..114675415,3	K562	blood:
9	chr2:114512877..114514598-chr2:114675110..114678016,2	K562	blood:
10	chr2:114666697..114668680-chr2:114673131..114675715,2	K562	blood:
11	chr2:114647540..114651375-chr2:114674898..114677081,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000270019	Chromatin interaction
ENSG00000115091	Chromatin interaction
ENSG00000115084	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10496454	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11676281	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11678413	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11680166	0.85[EUR][1000 genomes]
rs11681425	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11684493	0.84[AMR][1000 genomes]
rs11695436	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12995205	0.84[AMR][1000 genomes]
rs12996997	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13011246	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13020510	0.84[AMR][1000 genomes]
rs13023671	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17045951	1.00[ASN][1000 genomes]
rs17046767	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17197639	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1949722	0.84[AMR][1000 genomes]
rs2046545	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2292100	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34775317	0.84[AMR][1000 genomes]
rs34803179	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35596137	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35820702	0.85[EUR][1000 genomes]
rs3748997	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60022746	0.84[AMR][1000 genomes]
rs6711054	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6723553	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71416564	0.84[AMR][1000 genomes]
rs71416565	0.84[AMR][1000 genomes]
rs71416571	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72952576	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72954508	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7590041	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114652200-114700600	Weak transcription	Fetal Brain Male	brain
2	chr2:114652400-114686000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr2:114653600-114734800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:114654600-114675400	Weak transcription	Fetal Stomach	stomach
5	chr2:114658000-114675400	Weak transcription	Aorta	Aorta
6	chr2:114658000-114689400	Weak transcription	Fetal Heart	heart
7	chr2:114661200-114683800	Weak transcription	Colonic Mucosa	Colon
8	chr2:114662400-114676200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr2:114662800-114690600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr2:114665400-114692800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr2:114667400-114700800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr2:114667800-114705000	Weak transcription	Esophagus	oesophagus
13	chr2:114668000-114675600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr2:114668000-114676000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr2:114668000-114690800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr2:114668200-114675400	Weak transcription	Pancreas	Pancrea
17	chr2:114668200-114692600	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr2:114668200-114695800	Weak transcription	Psoas Muscle	Psoas
19	chr2:114668200-114704800	Weak transcription	Gastric	stomach
20	chr2:114668400-114675400	Weak transcription	Thymus	Thymus
21	chr2:114668400-114696200	Weak transcription	Small Intestine	intestine
22	chr2:114668400-114735000	Weak transcription	Stomach Mucosa	stomach
23	chr2:114668600-114692800	Weak transcription	Colon Smooth Muscle	Colon
24	chr2:114668800-114675400	Weak transcription	Brain Hippocampus Middle	brain
25	chr2:114668800-114675400	Weak transcription	Spleen	Spleen
26	chr2:114668800-114676000	Weak transcription	Fetal Intestine Small	intestine
27	chr2:114668800-114703200	Weak transcription	Brain Cingulate Gyrus	brain
28	chr2:114669000-114675400	Weak transcription	Fetal Muscle Trunk	muscle
29	chr2:114669000-114686400	Weak transcription	Brain Angular Gyrus	brain
30	chr2:114669200-114686400	Weak transcription	Brain Substantia Nigra	brain
31	chr2:114669400-114693400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr2:114669600-114676400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr2:114670200-114677200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr2:114670200-114679800	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr2:114670200-114680800	Strong transcription	A549	lung
36	chr2:114670200-114680800	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr2:114670800-114677200	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr2:114670800-114679400	Strong transcription	Primary B cells from peripheral blood	blood
39	chr2:114670800-114680600	Strong transcription	Primary B cells from cord blood	blood
40	chr2:114670800-114693000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr2:114670800-114717400	Strong transcription	Fetal Thymus	thymus
42	chr2:114670800-114719000	Strong transcription	Dnd41	blood
43	chr2:114671000-114676600	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr2:114671000-114677200	Strong transcription	NHDF-Ad	bronchial
45	chr2:114671000-114677400	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr2:114671000-114677400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr2:114671000-114677800	Strong transcription	NH-A	brain
48	chr2:114671000-114678600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr2:114671000-114679000	Strong transcription	HSMM	muscle
50	chr2:114671000-114681200	Strong transcription	Primary monocytes fromperipheralblood	blood

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