Variant report

Variant	rs34775317
Chromosome Location	chr2:114600801-114600802
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:114513011..114515179-chr2:114599381..114601639,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115084	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10496454	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11676281	0.84[AMR][1000 genomes]
rs11678413	0.84[AMR][1000 genomes]
rs11681425	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11684493	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11686283	0.81[EUR][1000 genomes]
rs11695436	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12995205	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12996997	0.84[AMR][1000 genomes]
rs13011246	0.84[AMR][1000 genomes]
rs13020510	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13025971	0.83[EUR][1000 genomes]
rs13026880	0.83[EUR][1000 genomes]
rs17197639	0.84[AMR][1000 genomes]
rs1949722	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2046545	0.84[AMR][1000 genomes]
rs2292100	0.84[AMR][1000 genomes]
rs34169450	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34803179	0.84[AMR][1000 genomes]
rs35392321	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35596137	0.84[AMR][1000 genomes]
rs35680405	0.84[AMR][1000 genomes]
rs35893878	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35905948	0.83[EUR][1000 genomes]
rs3748997	0.84[AMR][1000 genomes]
rs4544443	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60022746	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6711054	0.84[AMR][1000 genomes]
rs6723553	0.84[AMR][1000 genomes]
rs6739861	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71416564	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71416565	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71416571	0.84[AMR][1000 genomes]
rs72952576	0.84[AMR][1000 genomes]
rs72954508	0.84[AMR][1000 genomes]
rs74182871	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7590041	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7591643	0.83[EUR][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114574200-114603600	Weak transcription	Primary B cells from cord blood	blood
2	chr2:114586400-114601000	Weak transcription	Primary T cells from cord blood	blood
3	chr2:114596400-114621000	Weak transcription	Aorta	Aorta
4	chr2:114596600-114603400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr2:114596600-114611600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr2:114596800-114632800	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr2:114597600-114631400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr2:114600000-114601800	Enhancers	Placenta	Placenta
9	chr2:114600000-114602600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr2:114600200-114601000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr2:114600200-114601000	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr2:114600200-114601200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr2:114600200-114601400	Enhancers	K562	blood
14	chr2:114600200-114602000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr2:114600400-114601200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr2:114600400-114601200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr2:114600400-114601200	Enhancers	NHLF	lung
18	chr2:114600600-114601000	Flanking Active TSS	NHDF-Ad	bronchial
19	chr2:114600600-114601000	Flanking Active TSS	NHEK	skin
20	chr2:114600600-114601200	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr2:114600600-114601200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr2:114600600-114601200	Flanking Active TSS	HMEC	breast
23	chr2:114600600-114601200	Enhancers	Osteobl	bone
24	chr2:114600800-114601000	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr2:114600800-114601400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr2:114600800-114601400	Active TSS	Duodenum Smooth Muscle	Duodenum
27	chr2:114600800-114601600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr2:114600800-114601600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin

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