Variant report

Variant	rs4544443
Chromosome Location	chr2:114577030-114577031
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:114574865..114577393-chr2:114628655..114630821,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC35F5-2	chr2:114576628-114577172	XLOC_002283

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11684493	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11899742	0.84[EUR][1000 genomes]
rs12995205	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13020510	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13025971	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13026880	0.80[EUR][1000 genomes]
rs1949722	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34169450	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34775317	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35392321	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35893878	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35905948	0.80[EUR][1000 genomes]
rs60022746	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6542174	0.84[EUR][1000 genomes]
rs6739861	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71416564	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71416565	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs74182871	0.83[EUR][1000 genomes]
rs7591643	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114568200-114586000	Weak transcription	Primary T cells from cord blood	blood
2	chr2:114574200-114603600	Weak transcription	Primary B cells from cord blood	blood
3	chr2:114575400-114577200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:114575400-114577200	Enhancers	Fetal Intestine Small	intestine
5	chr2:114575400-114578000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr2:114575400-114578200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr2:114575400-114578200	Enhancers	Fetal Intestine Large	intestine
8	chr2:114575600-114577200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:114575800-114577200	Weak transcription	Ovary	ovary
10	chr2:114576200-114578000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr2:114576200-114578800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr2:114576400-114577200	Enhancers	K562	blood
13	chr2:114576400-114578200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr2:114576400-114579200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr2:114576400-114580000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr2:114576400-114582800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr2:114576400-114588400	Weak transcription	Esophagus	oesophagus
18	chr2:114576600-114577200	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr2:114576600-114577200	Enhancers	Colon Smooth Muscle	Colon
20	chr2:114576600-114577200	Enhancers	A549	lung
21	chr2:114576600-114577400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr2:114576600-114577800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr2:114576800-114578000	Enhancers	HepG2	liver
24	chr2:114577000-114578000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr2:114577000-114578000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr2:114577000-114579600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr2:114577000-114579800	Weak transcription	NHDF-Ad	bronchial
28	chr2:114577000-114583800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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